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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.4G142300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
MYB |
Protein Properties |
Length: 304aa MW: 32199.9 Da PI: 6.3661 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.4G142300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.7 | 9.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +l+ + +G+g+W+ ++++ g++R++k+c++r+ +yl
Sevir.4G142300.1.p 14 KGPWTPEEDAKLLAYTSTHGTGNWTNVPQRAGLKRCGKSCRLRYTNYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
++T+eE++l+v ++++lG++ W++Ia+ ++ gRt++++k++w++
Sevir.4G142300.1.p 69 NFTQEEEDLIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 110
89******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MGRPPCCDKA NVKKGPWTPE EDAKLLAYTS THGTGNWTNV PQRAGLKRCG KSCRLRYTNY 60 LRPNLKHENF TQEEEDLIVT LHAMLGSRWS LIANQLPGRT DNDVKNYWNT KLSKKLRQRG 120 IDPITHRPIA DLMHSIGALA IRPPQPAPSP NGSSSASSYL PAPALPLVHD VAYHAAGILP 180 PPPPHQQQVV IARVDADAPA SPAADHGQQL KWSDFLADDA AAAFEAQYHH DASVAAHGGG 240 GGSILAAGSS SAGGGDDDAA AFIDAILDCD KETGVDQLIA ELLADPAYYA GSSSSSSEMG 300 WGC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT085491 | 0.0 | BT085491.1 Zea mays full-length cDNA clone ZM_BFc0020H06 mRNA, complete cds. |
GenBank | EU967089 | 0.0 | EU967089.1 Zea mays clone 299414 DNA binding protein mRNA, complete cds. |