PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G049300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 672aa    MW: 72139.1 Da    PI: 6.2217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G049300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-10373419447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         W   E+e l ++v+++G+g+Wk I +  +    gRt+ ++k++w++ 
  Sevir.4G049300.1.p 373 WCLLEEETLRKGVELYGSGNWKDILSNNPdvfIGRTPVDLKDKWRNM 419
                         55669****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-13364421IPR009057Homeodomain-like
PROSITE profilePS5129414.366365424IPR017930Myb domain
SuperFamilySSF466896.36E-15367441IPR009057Homeodomain-like
SMARTSM007172.4E-6369422IPR001005SANT/Myb domain
CDDcd116609.95E-18371421No hitNo description
PfamPF002491.5E-8372419IPR001005SANT/Myb domain
Gene3DG3DSA:3.30.9.101.1E-6467596No hitNo description
PfamPF012661.1E-9468647IPR006076FAD dependent oxidoreductase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MPRLTPADAT LILDHALGDP SVPAAAAHAL LAALPFPSDP TPRLRRAVLL RRLAADPVSA  60
SALDTLHLLA SLPASPSPSP SPIAAAHIAV AGFLAASAPD FDAAAAALFA RPDGRVRRAV  120
DEGGSRALAS DDAVATVEQF EAAVGNSFSQ VVLRGLWGDR DAAEERVREL LAAEWAGMGP  180
SLLEVAAERI VGDVAVGTWR DADEATRAKF RVLAGEEKTR EILVKLEEST SRVNPISTPE  240
VSKVVDALKT SCAELHSVVE DPLPAAKAAA DKVLATRINR TVNLNAEGGQ PAACGTAGPS  300
VLNERNNGPN KGAPPSLMDW NPTARTFQWE ESPDPEGSEP ALRRPHLPSP RRIPVSPLPA  360
AENKNKRRRA RKWCLLEEET LRKGVELYGS GNWKDILSNN PDVFIGRTPV DLKDKWRNMM  420
RGIVRPPTTE KAADILLEAL FSACQNLADE ASSLPNEQKE FKLYRQHVDN LHQLAGDYDS  480
VIICLGAKAC SLPELANKLP LRTCRGVIAE FQLPSDTVEE YGNQSPSILS DAWMAFQGPR  540
TVSIGSTWQW KSENYSSTVS DEEALTAKDE LLPKASGVYP GISKWDFVHA RAGIRAMPPL  600
TTNGSLPLLG CLDEMVGKKS NCKFWLVGGL GARGLLYHGL VGKLTAKATI CCDENVIPSE  660
FTCWKGIKPS Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G049300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964676.10.0uncharacterized protein LOC101754071
TrEMBLK3XVP70.0K3XVP7_SETIT; Uncharacterized protein
STRINGSi006005m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-12TRF-like 5