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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sevir.3G421000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
MYB |
Protein Properties |
Length: 258aa MW: 27859.2 Da PI: 8.0415 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.3G421000.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 48.7 | 1.7e-15 | 14 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEd +l +++q+Gg W + +r+ g++R++k+c++rw++yl
Sevir.3G421000.1.p 14 RGPWSEEEDARLRSYIEQHGGAvagGWMALPRKAGLRRCGKSCRLRWLNYL 64
89******************99***************************97 PP
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2 | Myb_DNA-binding | 40.3 | 7.6e-13 | 71 | 113 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++eEd + + + G++ W++Ia++++ gRt++ +k++w++
Sevir.3G421000.1.p 71 GGFSPEEDRAICALYAAVGSR-WSLIAAYLP-GRTDNAVKNYWNT 113
569******************.*********.***********97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MGRSPCCDKA AVKRGPWSEE EDARLRSYIE QHGGAVAGGW MALPRKAGLR RCGKSCRLRW 60 LNYLRPGVRH GGFSPEEDRA ICALYAAVGS RWSLIAAYLP GRTDNAVKNY WNTRLKKKLL 120 SVSFEGEPCN AVGRNAAPPV ASPMAPWTAL PYTCYGGGGG VDQMRVVGAG GGTTDNVIAS 180 TNSAAVVSQP ADASYSSEPM AAATELDEIF RSMGTTGGEH SDLSQSSTET ETSWYQYRQH 240 AGESVLQQHL EMPYLYW*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1a5j_A | 3e-24 | 14 | 119 | 7 | 108 | B-MYB |