PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G400900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

BES1

Protein Properties

Length: 415aa MW: 41894 Da PI: 9.8845

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G400900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	137.9	9.9e-43	54	165	4	119
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 r+p++ ErEnn+rRERrRR ++++iy+ LRa+Gny lp +DnneVlkA creAGw+ve+DGttyr+gs+p+ g+ a +sp ss Sevir.3G400900.1.p 54 ARTPSQVERENNRRRERRRRLVSSRIYTALRAEGNYTLPRNCDNNEVLKAVCREAGWIVEPDGTTYRRGSRPPrGVLGGFGATAPVSPASS 144 799**********************************************************************333344444444566666 PP DUF822 94 lqsslkssalaspvesysaspksssf 119 + + + p++sy ++ sss+ Sevir.3G400900.1.p 145 TPP-----TPTPPTASYGLTLGSSSS 165 552.....233445555555555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.6E-40	54	167	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MNEGGGMVAA GAGGAGGSGG SGGGDRDKGK GIVFGNEYGS ARGRAKGRAR NAPARTPSQV 60 ERENNRRRER RRRLVSSRIY TALRAEGNYT LPRNCDNNEV LKAVCREAGW IVEPDGTTYR 120 RGSRPPRGVL GGFGATAPVS PASSTPPTPT PPTASYGLTL GSSSSSSSYL TLGGGSGGIF 180 YGAAGSSSGL PAWFQRLSQA DGQASSSTTA SAPVTPQNAS PPQLTLARWA SEDNAAAAAA 240 AAAANLQPRW AAGAGPSRYA PQAQQQPLTM PPSPVGCGSG AVDPVLLLAG IQISAAAANN 300 NNYRRPPRPY TYSPLGTPGA SSFAAGASSS RLGTPGPVQS SGGPWAPAPA PAPAPAPAPA 360 PAPAARGGDD GDVEMEPREF SFAWDGEVSF GDYTDEDGLE LTLGNSKTRA DRRG*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MNEGGGMVAA GAGGAGGSGG SGGGDRDKGK GIVFGNEYGS ARGRAKGRAR NAPARTPSQV  60
ERENNRRRER RRRLVSSRIY TALRAEGNYT LPRNCDNNEV LKAVCREAGW IVEPDGTTYR  120
RGSRPPRGVL GGFGATAPVS PASSTPPTPT PPTASYGLTL GSSSSSSSYL TLGGGSGGIF  180
YGAAGSSSGL PAWFQRLSQA DGQASSSTTA SAPVTPQNAS PPQLTLARWA SEDNAAAAAA  240
AAAANLQPRW AAGAGPSRYA PQAQQQPLTM PPSPVGCGSG AVDPVLLLAG IQISAAAANN  300
NNYRRPPRPY TYSPLGTPGA SSFAAGASSS RLGTPGPVQS SGGPWAPAPA PAPAPAPAPA  360
PAPAARGGDD GDVEMEPREF SFAWDGEVSF GDYTDEDGLE LTLGNSKTRA DRRG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	3e-19	75	132	392	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	3e-19	75	132	392	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	3e-19	75	132	392	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	3e-19	75	132	392	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G400900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819084.1	4e-86	protein BZR1 homolog 4-like
TrEMBL	A0A368QN84	0.0	A0A368QN84_SETIT; Uncharacterized protein
STRING	Si024823m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18666	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19350.6	4e-22	BES1 family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G400900.1.p