PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 619aa MW: 68734.8 Da PI: 7.8817

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G222700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.7e-15	68	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ede+l +av g++Wk+Ia+ ++ Rt qc +rwqk+l Sevir.3G222700.1.p 68 KGGWTLDEDEKLRKAVGACNGKNWKKIAESFP-DRTSVQCLHRWQKVL 114 688***************************.**********986 PP
2	Myb_DNA-binding	59.7	6.6e-19	120	166	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++++ vk++G++ W++Iar + gR +kqc++rw+++l Sevir.3G222700.1.p 120 KGPWTQEEDDIIINMVKKYGPKKWSLIARSLD-GRIGKQCRERWHNHL 166 79****************************.***********97 PP
3	Myb_DNA-binding	53.5	5.4e-17	172	215	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +W+ eE+ +da++++G++ W+ Ia+ ++ gRt++++k++w++ Sevir.3G222700.1.p 172 KEAWSVEEERVVADAHRLHGNK-WAEIAKLLP-GRTDNSIKNHWNS 215 579*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.208	63	114	IPR017930	Myb domain
SMART	SM00717	1.6E-13	67	116	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-13	68	114	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.73E-15	69	124	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-23	70	125	IPR009057	Homeodomain-like
CDD	cd00167	1.36E-11	71	114	No hit	No description
PROSITE profile	PS51294	31.769	115	170	IPR017930	Myb domain
SuperFamily	SSF46689	8.61E-31	117	213	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-17	119	168	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-17	120	166	IPR001005	SANT/Myb domain
CDD	cd00167	2.18E-15	122	166	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-26	126	170	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.697	171	221	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-21	171	221	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-15	171	219	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-15	172	215	IPR001005	SANT/Myb domain
CDD	cd00167	2.63E-11	174	217	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MGAMAAVKVE EPEGSTGNWW NLAASSPSPS VSEAGSYGGG ALMSPVESNP ADSVSGRRRT 60 SGPVRRAKGG WTLDEDEKLR KAVGACNGKN WKKIAESFPD RTSVQCLHRW QKVLNPELIK 120 GPWTQEEDDI IINMVKKYGP KKWSLIARSL DGRIGKQCRE RWHNHLDPQI IKEAWSVEEE 180 RVVADAHRLH GNKWAEIAKL LPGRTDNSIK NHWNSSLRKR LGDYNASRAL PVSVHMVHNS 240 FKHEKAKLSG GNHIDLNKEP NINLERPPEI VDHSEHATHL HACSLKNIKS CSDFLSLAMP 300 TAQPKKLCEM FGGGYSAVAL AGIQGLKMDF VHDKGTEINV VCKERLKNDL LNVEVRKLDH 360 ATDTIGYSGS AKVEGKTVNN MCKLFLPNES NSFGSLCYEI PKLEDVVPCH SPVFSTPHIQ 420 QCCEDGFLPP VGYTTSSRDG DISDQLSVES ILKSAAENFP GTPSILRRRK RETPAHDEDS 480 NLKIAILHSN SFHTPLGKCT TESPHSFKTA SFLSLGPPDN EGLSATLGSF DVSPPYRLRS 540 KRMAILKTVE KKHLNFSSDE MDNYDSPDTM KKYSSWKTEC TNTYTDVSSK QEMKMTEHMV 600 DLETLAKDFT HTTKLDLI*

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MGAMAAVKVE EPEGSTGNWW NLAASSPSPS VSEAGSYGGG ALMSPVESNP ADSVSGRRRT  60
SGPVRRAKGG WTLDEDEKLR KAVGACNGKN WKKIAESFPD RTSVQCLHRW QKVLNPELIK  120
GPWTQEEDDI IINMVKKYGP KKWSLIARSL DGRIGKQCRE RWHNHLDPQI IKEAWSVEEE  180
RVVADAHRLH GNKWAEIAKL LPGRTDNSIK NHWNSSLRKR LGDYNASRAL PVSVHMVHNS  240
FKHEKAKLSG GNHIDLNKEP NINLERPPEI VDHSEHATHL HACSLKNIKS CSDFLSLAMP  300
TAQPKKLCEM FGGGYSAVAL AGIQGLKMDF VHDKGTEINV VCKERLKNDL LNVEVRKLDH  360
ATDTIGYSGS AKVEGKTVNN MCKLFLPNES NSFGSLCYEI PKLEDVVPCH SPVFSTPHIQ  420
QCCEDGFLPP VGYTTSSRDG DISDQLSVES ILKSAAENFP GTPSILRRRK RETPAHDEDS  480
NLKIAILHSN SFHTPLGKCT TESPHSFKTA SFLSLGPPDN EGLSATLGSF DVSPPYRLRS  540
KRMAILKTVE KKHLNFSSDE MDNYDSPDTM KKYSSWKTEC TNTYTDVSSK QEMKMTEHMV  600
DLETLAKDFT HTTKLDLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	8e-69	67	221	5	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	8e-69	67	221	5	159	MYB PROTO-ONCOGENE PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269\|PubMed:17293435, ECO:0000269\|PubMed:19279197}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G222700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269\|PubMed:17293435}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961857.1	0.0	transcription factor MYB3R-2
Refseq	XP_014660295.1	0.0	transcription factor MYB3R-2
Refseq	XP_022681301.1	0.0	transcription factor MYB3R-2
Swissprot	Q0JHU7	0.0	MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBL	K3Z4L6	0.0	K3Z4L6_SETIT; Uncharacterized protein
STRING	Si021484m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3099	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	6e-93	myb domain protein 3r-5

Link Out ? help Back to Top
Phytozome	Sevir.3G222700.1.p

Publications ? help Back to Top
Kakar KU, et al. A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.). Plant Biol (Stuttg), 2016. 18(3): p. 471-83 [PMID:26681628]