PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G164600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 313aa    MW: 33498.1 Da    PI: 4.9542
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G164600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-161764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
  Sevir.3G164600.1.p 17 KGLWSPEEDEKLYNHIIRHGVGCWSSVPKLAGLQRCGKSCRLRWINYL 64
                        678*******************************************97 PP
2Myb_DNA-binding52.61.1e-1670114147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++ 
  Sevir.3G164600.1.p  70 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 114
                         899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6221264IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-231267IPR009057Homeodomain-like
SuperFamilySSF466897.11E-2914111IPR009057Homeodomain-like
SMARTSM007172.3E-121666IPR001005SANT/Myb domain
PfamPF002499.7E-151764IPR001005SANT/Myb domain
CDDcd001679.29E-122064No hitNo description
PROSITE profilePS5129426.03865119IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2668119IPR009057Homeodomain-like
SMARTSM007172.5E-1669117IPR001005SANT/Myb domain
PfamPF002496.5E-1570114IPR001005SANT/Myb domain
CDDcd001677.00E-1272112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRLSCGGGG VQPKLRKGLW SPEEDEKLYN HIIRHGVGCW SSVPKLAGLQ RCGKSCRLRW  60
INYLRPDLKR GSFSQQEEDL IVALHEILGN RWSQIASHLP GRTDNEIKNF WNSCLKKKLR  120
QRGIDPSTHK PIASAEAGTA LPDAGDHDHK PAVAESDGLA TKQPAVFDPF PVADFAFDLG  180
AAGVAALYGG PYDDVGGKAS PDDAAGFVAD YSSVLDVSEN LGYGESSSNS SNWTCAEMGG  240
AVLDSEVLNW ASSGAAATAK QEPYTDLERQ HSGGYGGGGQ AADDDDALEH KFALPCGQEQ  300
SLAHFDFNLE YF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-281111921128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G164600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794200.0HF679420.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB14 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961344.10.0myb-related protein Hv33
SwissprotP200271e-120MYB3_HORVU; Myb-related protein Hv33
TrEMBLK3Z8600.0K3Z860_SETIT; Uncharacterized protein
STRINGSi022730m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-76myb domain protein 86