PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 307aa MW: 31591.7 Da PI: 5.4001

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G017200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.5e-08	20	67	2	44
SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrw 44 g+WT e ++ + +av+ + + +W++ a+ + g+t+ +++ ++ Sevir.3G017200.1.p 20 GAWTREQEKAFENAVATMAEDgddgdaRWEKLAEAVE-GKTADEVRRHY 67 89***************99************.********9 PP
2	Myb_DNA-binding	39.7	1.1e-12	133	177	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky Sevir.3G017200.1.p 133 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 177 6***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.992	14	71	IPR017877	Myb-like domain
SMART	SM00717	2.0E-5	18	73	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-4	20	68	IPR009057	Homeodomain-like
Pfam	PF00249	2.6E-6	20	68	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.36E-8	22	77	IPR009057	Homeodomain-like
CDD	cd00167	2.25E-6	22	67	No hit	No description
PROSITE profile	PS51294	16.605	126	182	IPR017930	Myb domain
SuperFamily	SSF46689	2.32E-16	128	183	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-17	130	180	IPR006447	Myb domain, plants
SMART	SM00717	9.3E-11	130	180	IPR001005	SANT/Myb domain
CDD	cd00167	3.38E-10	133	178	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-10	133	176	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-11	133	177	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MAVEEASSSG GGGDGEEGSG AWTREQEKAF ENAVATMAED GDDGDARWEK LAEAVEGKTA 60 DEVRRHYEFL VEDVEGIDSG RVPLPTYAAD GGAEEGGTGG GGGGGKKGSG GGGGHGEKGS 120 AKSVEQERRK GIAWTEDEHR LFLLGLEKYG KGDWRSISRN FVISRTPTQV ASHAQKYFIR 180 LNSINRERRR SSIHDITSVN NGDASAVQGP ITGQTNGQAA NPGKPSKQSP QPANAPPGVD 240 AYGTTIGQPV GGPLVSAVGT PVTLPVPAPP HMAYGMHTPV PGAVVPGAPV NIAPMPYPMP 300 PPSSHG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-16	18	92	6	78	RADIALIS
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	111	GGKKGSGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00500	DAP	Transfer from AT5G08520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G017200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679443	0.0	HF679443.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB37 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960078.1	0.0	transcription factor SRM1
Swissprot	Q9FNN6	1e-102	SRM1_ARATH; Transcription factor SRM1
TrEMBL	K3Z892	0.0	K3Z892_SETIT; Uncharacterized protein
STRING	Si022762m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6376	38	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-74	MYB family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G017200.1.p

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]