PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G379600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 758aa    MW: 83143.2 Da    PI: 7.3195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G379600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056587123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ Cgk F r  nL+ H r H
  Sevir.2G379600.1.p 65 FVCEVCGKGFQRDQNLQLHRRGH 87
                        89******************988 PP
2zf-C2H215.64.5e-05144165223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          Cp Cgk++  + +Lk H +t+
  Sevir.2G379600.1.p 144 ACPRCGKRYAVQADLKAHAKTC 165
                         6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.0E-86487No hitNo description
SMARTSM003550.0146587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356587IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-56587IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM0035585108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-5131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.0E-8138163No hitNo description
SMARTSM0035590143163IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663143171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MRPHPTAPEA GPEQEAPATA PEAALPLAAA APAPVKKKRN LPGTPDPDAE VIALSPGTLL  60
ATNRFVCEVC GKGFQRDQNL QLHRRGHNLP WRLRQRGPGA APPRRRVYVC PEPGCVHHSP  120
ARALGDLTGI KKHFCRKHGE KRWACPRCGK RYAVQADLKA HAKTCGTREY RCDCGTLFTR  180
RDSFVTHRAF CGALVEETGR VLAPPAPPSP RPPDLEAEEN VDKDKGQEEE ETEDSAGAEV  240
EQPKPVEAPA PEEPQRIPSP PPLPQEPPRR PSPPPLPQEP PRRPSPPPLP KEPPRRPSPP  300
PLPKEPQLFP SPLRFPLEQR PVVAVVPNVD EPEVVAETTV TAKLEDEADT CFKEADQYKE  360
AELEVSNLLD KDTPMLPCFL PSPSEAIGTD GSSTTCGAGG SVSNSIAPST TTNTFAGLFA  420
SATTSTTSQS RSLRDLIGVD PTFLCLAIGA PSSLFPQTSA SNPGTFAPPP APHMSATALL  480
QKAAEVGASQ SSSSFLKEFG LASSSSSSPP SKQLPQGRFA ENSMQPWHHR SNQQMERHRN  540
HQQREMESSS QPWHHRSHQQ MEMERHRNRQ QMEMESSSQP WHHRSTQQME MERHRNHQQR  600
EMESSSQRWH HHRSDQQMDM ERHRSHQQME MESSTQRWPH NRSSQQMEVM ERHHRTSQQM  660
ERESRAMLSG GLGLGLAYES GNAGLPDLMM GPSPLFGPKP ATLDFLGLGI GGTMGGSTTN  720
GGLPALMVGG ELDVGSSAQV PAPWEDAKRK TNGRTIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-29139201365Zinc finger protein JACKDAW
5b3h_F3e-29139201365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G379600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680094.10.0protein indeterminate-domain 1
TrEMBLA0A0Q3R8E40.0A0A0Q3R8E4_SETIT; Uncharacterized protein
STRINGSi028906m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.12e-90C2H2 family protein