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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sevir.2G332000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
MYB |
| Protein Properties |
Length: 383aa MW: 40374.5 Da PI: 6.9296 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.2G332000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+lv++++ +G +W++++++ g+ R++k+c++rw +yl
Sevir.2G332000.1.p 13 RGLWSPEEDEKLVKYITAHGHSCWSAVPKHAGLQRCGKSCRLRWINYL 60
788*******************************************97 PP
|
| 2 | Myb_DNA-binding | 49.4 | 1e-15 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg ++ +E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
Sevir.2G332000.1.p 66 RGTFSDQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
899*******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MGHHCCSKQK VKRGLWSPEE DEKLVKYITA HGHSCWSAVP KHAGLQRCGK SCRLRWINYL 60
RPDLKRGTFS DQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120
DPKTHNLLPA SRSLLHGNGA ANPSNNPAQF HSNGATANGG ATTPFTISSP TKAAAYDTVT 180
APPPPEMSAP AMYDVVTNPA GMFTGHDQAA AAAIPAGYSY PDNGGGVLMS FRDQNAGLQT 240
SMDFMNGSSS SSSMDHAAGM PNGNGFSQGM GAAFMDVTAG MWTTAVDSAM CAGIEVVQQQ 300
QQPLPPLQQP QGLVQGEVIG RPAVMNGGGA AADKGMDMMD VSSVYGSAGA TAFDLELMES 360
CGLFCGGGGG AGNAMEQLQW DC*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP004006 | 7e-60 | AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06. |
| GenBank | AP004259 | 7e-60 | AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02. |
| GenBank | AP014963 | 7e-60 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012615 | 7e-60 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
