PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G287600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 298aa    MW: 31830.9 Da    PI: 8.2527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G287600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11109154454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Sevir.2G287600.1.p 109 NHVEAERHRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 154
                         899***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.627105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15107178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-11108159No hitNo description
Gene3DG3DSA:4.10.280.102.2E-15109170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-9109154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-10111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MADMDELLSP CPSFSPPLTP FFLSHAGHPV IEFASYEVPE QWMLDDGDNL WPVGCSLSPH  60
SELSAPPPPP QPAPPPQQQE PIVTAPAQRP GKRRGRKPGP RRVNGPTVNH VEAERHRREK  120
LNRRFCDLRA AVPTVSRMDK ASLLADAAAY IAELRARVAR LEAESRRAAA ARXELRARVA  180
RLEAESRRAA AARWEPAVVS CGTQGADETV VEVRMLGPDA AAVRATSAGT HAAARLMGAL  240
RSLELHVQHA CVTRVHGLTV QDVVVDVPAS LQDDGGGGLR AALLQVLQGS TPASPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-19108183783Transcription factor MYC2
5gnj_B9e-19108183783Transcription factor MYC2
5gnj_E9e-19108183783Transcription factor MYC2
5gnj_F9e-19108183783Transcription factor MYC2
5gnj_G9e-19108183783Transcription factor MYC2
5gnj_I9e-19108183783Transcription factor MYC2
5gnj_M9e-19108183783Transcription factor MYC2
5gnj_N9e-19108183783Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G287600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065251e-79AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072541e-79AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149651e-79AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-79CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957381.11e-153transcription factor MYC2
TrEMBLA0A368Q3D31e-152A0A368Q3D3_SETIT; Uncharacterized protein
STRINGSi032741m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-15bHLH family protein