PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G234000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 349aa    MW: 36595.7 Da    PI: 6.3778
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G234000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-17170224256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sevir.2G234000.1.p 170 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 224
                         788899***********************************************98 PP
2HD-ZIP_I/II126.51.2e-40170260192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Sevir.2G234000.1.p 170 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-AL 259
                         69*************************************************************************************9.55 PP

         HD-ZIP_I/II  92 k 92 
                         k
  Sevir.2G234000.1.p 260 K 260
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-18155220IPR009057Homeodomain-like
SuperFamilySSF466892.38E-18159227IPR009057Homeodomain-like
PROSITE profilePS5007116.989166226IPR001356Homeobox domain
SMARTSM003891.0E-15168230IPR001356Homeobox domain
CDDcd000862.86E-15170227No hitNo description
PfamPF000464.0E-15170224IPR001356Homeobox domain
PROSITE patternPS000270201224IPR017970Homeobox, conserved site
SMARTSM003401.4E-24226269IPR003106Leucine zipper, homeobox-associated
PfamPF021831.3E-10226260IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MELGLSLGET MADAGRDLVL GLGMGLGVRR DEEAETGREV RREHEFGAGR CGRSSPEPAV  60
RLTLLPGLVP SLGLPWPPSS ETSRHLEAST RGFDVNRAPS LSVAGAAAED EEEQDDAAGA  120
AAAASSSPNN SAGSFPTDFS AQGQAGTGGG GGGDRAGSRA SDEDDGGSAR KKLRLSKEQS  180
AFLEESFKEH ATLNPKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE  240
TLTEENRRLQ KELAELRALK TVHPFYMHLP ATTLSMCPSC ERVASNSSAP AAAAPAPASS  300
SSPSAAGGGI AAAPPEQRPS SFAALFSSPL NRPQAAQPQP QPQAPASS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218226RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G234000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956965.11e-172homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-148HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A1E5V7401e-174A0A1E5V740_9POAL; Homeobox-leucine zipper protein HOX11
STRINGSi030329m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-60homeobox from Arabidopsis thaliana