PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G218600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 478aa    MW: 51584.7 Da    PI: 9.4311
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G218600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.81.1e-12144200155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  s+n  ++k+   g ++ +e Aa+a++ a++k++g
  Sevir.2G218600.1.p 144 SIYRGVTRHRWTGRFEAHLWDkNSWNEsQNKKGKQGAYDDEEAAARAYDLAALKYWG 200
                         57*******************8888888775555599******************98 PP
2AP251.72.2e-16243294155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Sevir.2G218600.1.p 243 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 294
                         89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.47E-15144210IPR016177DNA-binding domain
PfamPF008476.8E-9144200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-13145210IPR001471AP2/ERF domain
SMARTSM003801.4E-20145214IPR001471AP2/ERF domain
PROSITE profilePS5103219.111145208IPR001471AP2/ERF domain
PRINTSPR003676.6E-6146157IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18243304IPR016177DNA-binding domain
PfamPF008472.1E-12243294IPR001471AP2/ERF domain
CDDcd000184.71E-23243304No hitNo description
Gene3DG3DSA:3.30.730.101.2E-17244303IPR001471AP2/ERF domain
SMARTSM003801.7E-25244308IPR001471AP2/ERF domain
PROSITE profilePS5103218.36244302IPR001471AP2/ERF domain
PRINTSPR003676.6E-6284304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDQKILEREI EGREERERPA GLSLSRPSTS SAHLAFALLS KHQLILPPHH RALPQSLPPS  60
LSLHIFKTAT SRGHHSWPPT SLPLLSLSHT LTMAKPRKNS AAASSTNSNS TASAAAAAGD  120
VGPRAKPKRT RKSVPRESPS QRSSIYRGVT RHRWTGRFEA HLWDKNSWNE SQNKKGKQGA  180
YDDEEAAARA YDLAALKYWG PDTILNFPAS AYEEELKEME GQSREEYIGS LRRKSSGFSR  240
GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE AAMAYDMAAI EYRGLNAVTN  300
FDLSRYIKWL RPGADGVAAA AAAQDPHPML GGLAQQQLLP PADAAAFQHQ GGAEFPLPPR  360
TSLGHTPTTS ALSLLLQSPK FKEMIERTSA AESGATTSSS SSPPTPSPSP PPPTKAQHQA  420
AGGGGAASPQ CGFPEDIQTF FGCEDVAGVG VGVDVDALFF GDLAAYASPA FHFELDL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G218600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0551110.0BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799409.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-102AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2S3H0330.0A0A2S3H033_9POAL; Uncharacterized protein
STRINGSi030129m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.15e-90ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]