PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G363800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 272aa    MW: 30276.6 Da    PI: 8.4974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G363800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH521.3e-165096455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  Sevir.1G363800.1.p 50 VHNLSEKRRRSRINEKMKALQTLIPNS-----SKTDKASMLDDAIEYLKQLQ 96
                        6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-2043106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-2044106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.9814695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-1549100No hitNo description
PfamPF000103.4E-145096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1852101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDAQQLDLIL RHHHQSMANV CESEDALGSS ESEPARPARP RGKRSRAAEV HNLSEKRRRS  60
RINEKMKALQ TLIPNSSKTD KASMLDDAIE YLKQLQLQVQ MLSMRNGLYL PPANLSGGPE  120
ALAPSEVCAT LNQSGVKASE SGVVLPMNQI SLAHHSNHDQ RHNKPLVLQS APTSSTTIEP  180
RFLQEPAQSN LQSFLLALPP EMILKEDMML TYRLTSVQGT SLPGHEIKPA RQETCMVNSD  240
RFDRGSLRKE VAQDMVPKNT ESLLFMPYLH R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G363800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333821e-173BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds.
GenBankBT0640561e-173BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds.
GenBankKJ7269881e-173KJ726988.1 Zea mays clone pUT3689 bHLH transcription factor (bHLH168) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954276.10.0transcription factor SPATULA isoform X1
TrEMBLK3YU160.0K3YU16_SETIT; Uncharacterized protein
TrEMBLK3YUQ70.0K3YUQ7_SETIT; Uncharacterized protein
STRINGSi017762m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-34bHLH family protein