PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G294700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 37253.2 Da PI: 6.7209 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.4 | 2.9e-09 | 157 | 204 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + sk Ka +L + ++Y++sLq Sevir.1G294700.1.p 157 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 204 8*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.21E-10 | 151 | 208 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-16 | 151 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.491 | 153 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-16 | 153 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 157 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-9 | 159 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MARCQGTVES LCQGLLDLDD DKFGAMCSAF GYLQEWPDLG AMCGASLGAP AAAAPGAGDG 60 NDTSSCSGSA GAGGFRKRRP DAYLDAKGDG NDMSKRPRGK QQQLGGLGEI AAPGKGKQER 120 PKAGTKKKAE AASTAAAAGQ KTDYIHVRAR RGQATDSHSL AERVRRERIS ERMRYLQELV 180 PGCSKVTGKA GMLDEIINYV QSLQKQVEFL SMKIAASNPV VSFDIVEDLF GRQLKQACNP 240 AALPAMALPA GQLEPACLQM NPMQQVHPSA AAGSTGFGLD MVVNNLYPPP AAARCPVSAA 300 TPVTAAAGPS IEPCLNVNGA AAAAAWDIGS QNLFGGFDAQ FQSVESDCLL DNLKMEM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G294700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066715 | 0.0 | BT066715.1 Zea mays full-length cDNA clone ZM_BFb0058C16 mRNA, complete cds. | |||
GenBank | KJ726861 | 0.0 | KJ726861.1 Zea mays clone pUT3402 bHLH transcription factor (bHLH29) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953614.1 | 0.0 | transcription factor BHLH094 | ||||
TrEMBL | K3YTN4 | 0.0 | K3YTN4_SETIT; Uncharacterized protein | ||||
STRING | Si017630m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8252 | 37 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 5e-35 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G294700.1.p |