PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G034900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 612aa    MW: 64248.2 Da    PI: 7.4337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G034900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11393436452
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                         +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ +Y++
  Sevir.1G034900.1.p 393 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMN 436
                         78999********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.567389438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-16389456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15392458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9393436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12395444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-5404443No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MDTLFVIGQE SRLRILQRAA ARVPGCAYLC AWAALPASQP AAAASSSSPA ATSGRLLCCL  60
DAWLCDGGGA SCRGDATASR VRALFDAYRG SLCAAVSGCV PGWAYKDGRA FMELPANDLT  120
ASASLPVQQQ FYEMAAFMGC ESGEIEVGMS TPASGGSPMS LESSLHQVFS EDFFQQSLLE  180
ELLQLPPTRP SSPSSSLPSV SVGSPAAEGS TSLLRTMPVT PPPVATPSSG PERQAPAPPL  240
HHPRPPLASP FSWHGGRLHF PSPDADDAAM AEAMLAVISA SSSSALPTTH PSTSTAAPPP  300
GNHHHHGARR WPRRRGTTTT AFRAYNAALA PRVPWRPPGA PGQRMIKMGI SILRRMHMLR  360
FSRERTGGAT AMAQQAQEEE EDTPAAPTSS QLNHMISERR RRERLNESFE ALRGLLPPGS  420
KKDKATVLAK TLDYMNILVA QIADLEARNR SLESRAHQHA NGGGGGWKER PYYSSSEQQE  480
VVVLQGLSGG TSERVVQVHV TAGAASGAAA SASSSSSSAV AGREVTVRVE ARAAHGDVAE  540
LVARALAVIK EMGRFTVVAV DARRPGDGAA AHATFTLRAT AGEFDEASLR EAVMKVAAED  600
SATPAPSDDD S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1397402ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G034900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057973e-38AP005797.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1131G07.
GenBankAP0149583e-38AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126103e-38CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792423.10.0putative transcription factor bHLH041 isoform X2
TrEMBLK3YZ320.0K3YZ32_SETIT; Uncharacterized protein
STRINGSi019540m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-16bHLH family protein