PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G007200.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 329aa    MW: 36192.9 Da    PI: 7.0346
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G007200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-172672148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eE e+l++ v  + +++W++Iar ++ gR++kqc++rw  yl
  Sevir.1G007200.2.p 26 RGAWSQEENEILIQMVDAHSSKDWSSIARAVP-GRSRKQCRDRWTHYL 72
                        89******************************.***********9886 PP
2Myb_DNA-binding40.75.4e-1379119244
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                         ++W+++E+  l++a+k +G++ W   a+ ++ gRt+k +k++w
  Sevir.1G007200.2.p  79 MPWSEQEEIDLIRAHKIHGNK-WCELAKFFP-GRTGKAIKNYW 119
                         68*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.3352176IPR017930Myb domain
SuperFamilySSF466897.49E-2824119IPR009057Homeodomain-like
SMARTSM007172.2E-152574IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-222779IPR009057Homeodomain-like
CDDcd001676.27E-142872No hitNo description
PfamPF139215.5E-172989No hitNo description
SMARTSM007176.4E-1277125IPR001005SANT/Myb domain
CDDcd001671.13E-1180119No hitNo description
PROSITE profilePS5129414.54180127IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-1980127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMSPYKLLNI STMKNRKGQT VSFKRRGAWS QEENEILIQM VDAHSSKDWS SIARAVPGRS  60
RKQCRDRWTH YLDPAVNQMP WSEQEEIDLI RAHKIHGNKW CELAKFFPGR TGKAIKNYWT  120
GAMKKKIKSN LGSGSPEQLS PCPNDSLIPV GRDSTATSSQ DSSNNIPISS ADLPVRLKSK  180
HGLTEACRNA CTLKEKGPDS IHDEGSIPHS VNVSQMVDGR TVGSSLHILT EEKLVSPLSS  240
VDEKVSCVAA NSPKPLKEEE STNFLEIPPA LSFQSSNVHS DAICSSADPE SRQLHLASIA  300
DLLDMSYCES LMVIAPDSTN DEDFKLGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-28261274105C-Myb DNA-Binding Domain
1msf_C1e-28261274105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G007200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683586.10.0transcription factor MYB3R-1-like isoform X2
TrEMBLA0A368PFE60.0A0A368PFE6_SETIT; Uncharacterized protein
STRINGSi017987m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.13e-40myb domain protein 3r-4