PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.9G554100.1.p | ||||||||
Common Name | LOC101765829, SETIT_038598mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 295aa MW: 31338.8 Da PI: 5.8539 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.2 | 6.2e-08 | 167 | 210 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ r+RR+ri ++ +eL +l+P K++ ae+Le A +++k Lq Seita.9G554100.1.p 167 AAARQRRKRISEKTAELSRLIPGgH------KMNTAEMLEAAARHVKLLQ 210 677*******************955......****************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.659 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-9 | 165 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-11 | 165 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.25E-9 | 166 | 213 | No hit | No description |
Pfam | PF00010 | 2.2E-5 | 167 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MALSFHPTTA PLFGHLPAAD MSFLQDPEVT DALLGFVYDP LDPANAALDD LLNLPLHDDD 60 DAAFLGPLHD DSDGEVKQHC AKKQRACGDG AWRGLADIDA TGQLCNSGGN QQVPALPELL 120 NEFVLPLPPP SPPPLPPAAQ LPAPGSFVRA AEAKKAAGNV SQSLQSAAAR QRRKRISEKT 180 AELSRLIPGG HKMNTAEMLE AAARHVKLLQ AQVGMLALMR TVGSTENEKM PSVAQEQMHK 240 LLVRGDVQER LAAEGKCLVP RKLVDAVAKD NSVMSNALVN RELGWFVASL PAGQ* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.9G554100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661333.1 | 0.0 | uncharacterized protein LOC101765829 | ||||
TrEMBL | K4AI89 | 0.0 | K4AI89_SETIT; Uncharacterized protein | ||||
STRING | Si038598m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6201 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30670.1 | 3e-23 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.9G554100.1.p |
Entrez Gene | 101765829 |