PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G551000.1.p
Common NameLOC101772028, SETIT_036757mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 308aa    MW: 34366.7 Da    PI: 7.0344
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G551000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.2e-49111373128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                         pGfrFhPt+eel+++yL++ v+gkkl++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ 
  Seita.9G551000.1.p  11 PGFRFHPTEEELLDFYLAHMVHGKKLHF-DIIGTLNIYRHDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAIR 100
                         9*************************99.99***************99999**************************************** PP

                 NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         s+   ++++glkktLvfy+grap+g+ktdWvm+eyrl
  Seita.9G551000.1.p 101 SSenAKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 137
                         98666777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-584162IPR003441NAC domain
PROSITE profilePS5100554.9939162IPR003441NAC domain
PfamPF023653.3E-2511137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MASMEVEQDL PGFRFHPTEE ELLDFYLAHM VHGKKLHFDI IGTLNIYRHD PWDLPAMAKI  60
GEREWYFFVP RDRKAGSGGR PNRTTERGFW KATGSDRAIR SSENAKRVIG LKKTLVFYQG  120
RAPRGTKTDW VMNEYRLPDY GTGRGAPPPP QEDMVLCKIY RKATPLKELE QRASAMEEMQ  180
RRSDAAHYTA RASLTQASAS AGDDYLSSDD SFLFPSASSS PPSGDSYSAH KEAKQEAAEA  240
TVTVASTSLM QAANMAVMQP PAVRHGDLPT LQVPTNHGAL DWMQDLSQLR SPWQDQFFLS  300
PLANLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-471116422170NAC domain-containing protein 19
3swm_B2e-471116422170NAC domain-containing protein 19
3swm_C2e-471116422170NAC domain-containing protein 19
3swm_D2e-471116422170NAC domain-containing protein 19
3swp_A2e-471116422170NAC domain-containing protein 19
3swp_B2e-471116422170NAC domain-containing protein 19
3swp_C2e-471116422170NAC domain-containing protein 19
3swp_D2e-471116422170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G551000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070900.0AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985821.10.0NAC domain-containing protein 35
SwissprotQ10S651e-145NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLK4AD000.0K4AD00_SETIT; Uncharacterized protein
STRINGSi036757m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.16e-85NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]