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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.9G536000.1.p |
| Common Name | LOC101777578, SETIT_035742mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
MYB_related |
| Protein Properties |
Length: 441aa MW: 49489 Da PI: 10.0285 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G536000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 132 | 174 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+W+ eE ++l ++++++ + + Ia +++++R+ +++ksr+++
Seita.9G536000.1.p 132 AWSREETDQLFELCERFDLR-FIVIADRFPTTRSVEDLKSRYYS 174
7*******************.*********************96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0000812 | Cellular Component | Swr1 complex |
| GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 441 aa
Download sequence Send
to blast |
MDAKDILGLP KTPFSTSQEK KSRPPKEPQR KPDGVSREVY ALTGGVGMAP LMPTIEASHL 60
KRRPAAEKEK VAWQWLPFTS SARSDNLQLY HWVRVVNGVP PTGDYQFAKY NKKVDVLKYT 120
DEEYEKYLID PAWSREETDQ LFELCERFDL RFIVIADRFP TTRSVEDLKS RYYSVSRSLL 180
IHRARSFDDV SGNPLVKDSY DAAHETERKR ALSALLSQTK QQERKDAETL AEAKRIMESR 240
AASKNLDEAG MPSSSDNAMV PVDGVSPLSG THPPLTHPNT AANSSIPNSL RTLRVYLRTH 300
ALDQMVQAAS ASAGLRVIKR VDQTLQDLGV NLKPKVPTKA VCVEHLELRN EILTLLNLQK 360
QLQNKEAEVS ANRESSFTEA PSTPKRSNRD IDRTFIPDTI GFSGERAGKR DHKRKTTGRF 420
IDAPPSPTQS KRPRKLKGSD *
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3hm5_A | 4e-20 | 104 | 179 | 4 | 83 | DNA methyltransferase 1-associated protein 1 |
| 4iej_A | 4e-20 | 104 | 179 | 4 | 83 | DNA methyltransferase 1-associated protein 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU968439 | 0.0 | EU968439.1 Zea mays clone 320860 DNA methyltransferase 1-associated protein 1 mRNA, complete cds. |
