PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G520500.1.p
Common NameSETIT_035073mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 541aa    MW: 57450.6 Da    PI: 7.342
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G520500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55e-11260316155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Seita.9G520500.1.p 260 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDREEKAARAYDLAALKYWG 316
                         789******************333.44555535555.779999**************98 PP
2AP246.31e-14361410355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Seita.9G520500.1.p 361 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 410
                         9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.73E-17260326No hitNo description
SuperFamilySSF541714.05E-14260326IPR016177DNA-binding domain
PROSITE profilePS5103216.95261324IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-12261325IPR001471AP2/ERF domain
SMARTSM003801.4E-21261330IPR001471AP2/ERF domain
PfamPF008474.3E-8261316IPR001471AP2/ERF domain
PRINTSPR003679.3E-6262273IPR001471AP2/ERF domain
CDDcd000182.12E-23359420No hitNo description
SuperFamilySSF541719.15E-18359420IPR016177DNA-binding domain
PROSITE profilePS5103219.203360418IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18360418IPR001471AP2/ERF domain
SMARTSM003802.9E-33360424IPR001471AP2/ERF domain
PfamPF008471.4E-9361410IPR001471AP2/ERF domain
PRINTSPR003679.3E-6400420IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDMNNGWLGF SLSPSAGRGG YGDGGGGGGS GSGDGDGSCS SPAAASPLVA MPLQADGVPL  60
QYSSTTPDWE HAAEAKGPKL EDFMSITCSN KSSSSSSSLY DSCNHAADQA KYHEVHDLQP  120
FSGGSYFHDH GHGIGLGINM NAPPCNGFPD HHHHQFLPHH GEYFLGTPAN PSPTPGAMQS  180
TPPMYNAAAA AASAGGVVGG SMSISGIKSW LREAMYVPPE RSAALSLSVA DVPAAEPPQL  240
LPAPMPVARK PAQTFGQRTS QFRGVTRHRW TGRYEAHLWD NTCRKEGQTR KGRQGGYDRE  300
EKAARAYDLA ALKYWGPSTH INFPLSHYEK ELEEMKHMSR QEFIAHLRRN SSGFSRGASM  360
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDIS  420
KYDVKRICAS THLIGNDAAC RRSPTRALPD APAPAELPSS QGGGAASDNS DTSDGHRGAH  480
LLHGLQYAQQ QPHPMTFEAG ESSGGGTGWM AAAAAAAAAS RPVAGVPSVH QLPVFALWND  540
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G520500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985511.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK4A8670.0K4A867_SETIT; Uncharacterized protein
STRINGSi035073m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-112AP2 family protein