PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.9G374600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 203aa MW: 23011.1 Da PI: 7.0279 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.6 | 2.6e-14 | 21 | 95 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p f + ++ +++ + ++l+ +sg++W kl s+++++t GW+eF +++++ g+f+vF +dg+s f +kvf+ Seita.9G374600.1.p 21 IPQAFNKFME-NEPLG-VVSLKGPSGNTWHAKL--ILDSEGFYFTHGWNEFFIDHNINLGEFLVFGYDGHSHF--SIKVFD 95 7888874444.55555.8***************..888889***************************99999..888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 4.0E-5 | 12 | 97 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.86E-13 | 20 | 95 | No hit | No description |
Pfam | PF02362 | 6.7E-12 | 20 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-15 | 20 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-18 | 20 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.928 | 21 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MLLDCVCRGR SGEKILWVHR IPQAFNKFME NEPLGVVSLK GPSGNTWHAK LILDSEGFYF 60 THGWNEFFID HNINLGEFLV FGYDGHSHFS IKVFDLTGCE KQSTFLSCPS KDVTKECEKG 120 LMGIDATKTS HCPHEDYKGH NTMGGLQEDV DHTHMMHLIH HFSLSGIEKT RKLDILEEFS 180 GSSQRANDRL FGASFYNRRK GK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.9G374600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368SPT5 | 1e-149 | A0A368SPT5_SETIT; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53310.1 | 3e-13 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.9G374600.1.p |