PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Seita.9G238800.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 262aa MW: 29787.4 Da PI: 7.0189

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G238800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.2e-08	125	171	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 WT++E llv++v ++G g W+ + + Rt+ ++k++w ++ Seita.9G238800.1.p 125 HWTQDEVRLLVNGVSEYGVGKWRDVRTKYFltSIRTPVHLKDKWKNL 171 6************************9999988*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.744	118	176	IPR017930	Myb domain
SuperFamily	SSF46689	1.29E-14	120	200	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-6	122	174	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-6	125	171	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-11	125	173	IPR009057	Homeodomain-like
CDD	cd11660	2.51E-18	126	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MESEAMDLEL QLLWKGPSNE KHLDECVGVF DHYSHQIENQ FHSLNVKDGE VADEETNIDD 60 LDIEDYMDPS MLGCFFPNGS LGHGRRGPRR TSTSVRVVKF TPNFGLQEPS TSGGRKHGGR 120 KNNDHWTQDE VRLLVNGVSE YGVGKWRDVR TKYFLTSIRT PVHLKDKWKN LVKACKKESG 180 RMLLPLEQSL IERIMEIDDY DPYPKQSNSA PDRLAPTTSP DLPSVLPPAR WSVVKARTER 240 PSMHKSKNNN QRTSIDTNKD L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G238800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368SK04	0.0	A0A368SK04_SETIT; Uncharacterized protein
STRING	Si039881m	1e-103	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5225	21	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.1	1e-11	TRF-like 3

Link Out ? help Back to Top
Phytozome	Seita.9G238800.1.p