PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G144000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 352aa    MW: 37912 Da    PI: 5.4282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G144000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.95.1e-15155201455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Seita.9G144000.1.p 155 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 201
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.082151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12155201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-17155213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-19155210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-15156205No hitNo description
SMARTSM003534.2E-16157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAIRTLLIFQ IICKLITKAS ADMEDTGLFM EWATNKLQHE HPGAAADNDF SEATFPSLQA  60
LREASHAAEM VQELVAGVHA PNSWSSGDGV GDTAANHLPA IWSFGATSAQ PGSGSNGMME  120
APAARGQPDL VHGPPPTRRA GLRGLGSMSA SYAQDHIIAE RKRREKINQR FIELSTVIPG  180
LKKMDKATIL SDATRYVKEL QEKVKDLEEA SGSSGRSIET RLVLVKRPCL HAAAAADDDG  240
SPFSPSPGTP TARKELPEIE VRFSEKSVMV RVHCENSEGV AVKVLTEMEE LQLAIIHANV  300
MLFSACTLII AITVKVEEGF TITKEEIVDR LDSALLNQHS SCNSTEQAET C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERKRRE
2160165RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G144000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986324.10.0transcription factor bHLH25
TrEMBLA0A368SGI40.0A0A368SGI4_SETIT; Uncharacterized protein
STRINGSi038721m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-40bHLH family protein