PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G220800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 370aa    MW: 40940 Da    PI: 6.6714
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G220800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.94e-211052244
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        + en+s rqvt+skRr gilKKA+ELS+LCd+  ++++fs++ 
  Seita.8G220800.1.p 10 KLENSSGRQVTYSKRRSGILKKAKELSILCDIHLLLLMFSPSE 52
                        679*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-29160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.647153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-16323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRVKLKIKK LENSSGRQVT YSKRRSGILK KAKELSILCD IHLLLLMFSP SEKPTICIGE  60
KSSIEEVIAK YAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSG GQTVEELSSH  120
LGSLQCQMAE VQKRVSYWCD PEKVENIDHI RGMEQSLKDS LNRIRIHKEN FAKQHLIGLQ  180
CAAAQFQTDM QLPLGLTGDP GPSSWFPNAG ADGQQTMMLP DDSSLLHQRD IGCSTSTSLQ  240
SYPGYFSMSK QSTDTGGGSE HGQPAVHQQP PDFGQAECLT SLQLGAPFQY TPFDTSLFNE  300
RMFRPDAMEL HDGSAGIDFG GGHFDMSRSG DEASFQNWAS AACGASVFDH HQQQQHHQQQ  360
QPSSAQQQL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G220800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979887.10.0agamous-like MADS-box protein AGL65
SwissprotQ7X9I01e-86AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A368SAL90.0A0A368SAL9_SETIT; Uncharacterized protein
STRINGSi028357m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46263659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.18e-80AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]