PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.8G034600.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 479aa MW: 52198.4 Da PI: 6.6779

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G034600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	6.8e-11	174	203	5	34
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka+i++Le Seita.8G034600.1.p 174 KTIRRLAQNREAARKSRLRKKAYIQQLESS 203 6789***********************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.3E-7	170	233	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.956	172	216	IPR004827	Basic-leucine zipper domain
CDD	cd14708	7.97E-21	174	226	No hit	No description
Pfam	PF00170	4.4E-8	174	207	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.47E-7	174	209	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.2E-7	175	202	No hit	No description
PROSITE pattern	PS00036	0	177	192	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.0E-28	254	327	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MGETSSSSHS RQDPCALGYG FHGAVASATP NFFDQEGATY FGELEEAFMH QVASLRRTQA 60 ATTSAAHPTP FPTAAPAAAA TATARPPPTL DIFPAWPMRS LHTPKEGSNL TADSTEDSES 120 SSKNNSNHSS DQHGAAHNMA SQFDQGSQQQ QEEIQHKNMA TSSTTKSGKT LDPKTIRRLA 180 QNREAARKSR LRKKAYIQQL ESSKLKLAQM EQDMQRARSQ GLFLGGAPGA NTSSGAAMFD 240 VEYARWLDDH ARRMAELHGA LHAHLPDGGL RAIVDDTLTH HDELFQLKAV AVKSDVFHLI 300 TGVWTTPAER CFLWMGGFRP SDLLKTLLPQ LDPLTEQQVV GICNLQQSSQ QAEEALSQGL 360 EQLHQSLADT MAGGSLIDDA NMNFMGQMAL ALGKLSNLEG FVIQADNLRQ QTLHQMHRIL 420 TVRQAARCFL AIGEYHNRLR ALSSLWASRP REILVPDEGN CGEISIAAQS SQSQFSAF*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MGETSSSSHS RQDPCALGYG FHGAVASATP NFFDQEGATY FGELEEAFMH QVASLRRTQA  60
ATTSAAHPTP FPTAAPAAAA TATARPPPTL DIFPAWPMRS LHTPKEGSNL TADSTEDSES  120
SSKNNSNHSS DQHGAAHNMA SQFDQGSQQQ QEEIQHKNMA TSSTTKSGKT LDPKTIRRLA  180
QNREAARKSR LRKKAYIQQL ESSKLKLAQM EQDMQRARSQ GLFLGGAPGA NTSSGAAMFD  240
VEYARWLDDH ARRMAELHGA LHAHLPDGGL RAIVDDTLTH HDELFQLKAV AVKSDVFHLI  300
TGVWTTPAER CFLWMGGFRP SDLLKTLLPQ LDPLTEQQVV GICNLQQSSQ QAEEALSQGL  360
EQLHQSLADT MAGGSLIDDA NMNFMGQMAL ALGKLSNLEG FVIQADNLRQ QTLHQMHRIL  420
TVRQAARCFL AIGEYHNRLR ALSSLWASRP REILVPDEGN CGEISIAAQS SQSQFSAF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G034600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978700.1	0.0	transcription factor TGAL4
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A368S3T0	0.0	A0A368S3T0_SETIT; Uncharacterized protein
STRING	Si026421m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-133	bZIP family protein

Link Out ? help Back to Top
Phytozome	Seita.8G034600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]