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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.7G181500.1.p |
Common Name | LOC101770896, SETIT_010504mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
NAC |
Protein Properties |
Length: 345aa MW: 39456.3 Da PI: 6.4602 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.7G181500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 180.2 | 5.2e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPtdeelv++yL+kkv+ kk++l +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+
Seita.7G181500.1.p 7 VPPGFRFHPTDEELVDYYLRKKVALKKIDL-DVIKDVDLYKIEPWDLQEkcKIGNeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGR 96
69****************************.9***************952444332555******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
dk++++ k+ lvg++ktLvfykgrap+g+k+dW+mheyrle
Seita.7G181500.1.p 97 DKPIYV-KNCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
******.999*****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MDAFTHVPPG FRFHPTDEEL VDYYLRKKVA LKKIDLDVIK DVDLYKIEPW DLQEKCKIGN 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKNCLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETHET GIPHEEGWVV CRVFRKRLAT VQRMAGDSPY WFNDHAGFMA 180 PELGSPRQVA HHQQSAVMYH RAQSSYPCKV ELDYHHLLPQ EHFLQQLPQL ESPNKLPDLI 240 GHVATTLQPC SLTPEHGAAP RYTVEELHAE PVYLTGGDAS GTDWRALDKF VASQLSHGDT 300 DTTPKESSYS NPVQVFQQAE EKEEEALDYV STSASCGGDN DLWK*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KT075088 | 0.0 | KT075088.1 Panicum virgatum secondary wall NAC master switch (SWN6A) mRNA, complete cds. |
GenBank | KT075089 | 0.0 | KT075089.1 Panicum virgatum secondary wall NAC master switch (SWN6B) mRNA, complete cds. |