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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.7G135900.1.p |
| Common Name | LOC101781147, SETIT_009551mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
MYB_related |
| Protein Properties |
Length: 669aa MW: 72777.6 Da PI: 9.0677 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.7G135900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 21.6 | 5.2e-07 | 570 | 619 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
r+++T +E lv+av++ G+g+W+++ + ++Rt ++k++w ++
Seita.7G135900.1.p 570 RMPFTVDEVAALVEAVELIGTGRWRAVKMHAFehvEHRTYVDLKDKWKTL 619
789************************999989999***********986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 669 aa
Download sequence Send
to blast |
MVMRKRSDSG SRGRRTATMP RVPNSARGKR TTRKKKDEMC AFDLLATVAG TLLADQDISN 60
NVPNTSGAAK AKNKKAVKEE HRDEILPLNN MAVEKDCCNG CVVGSGGICA FPRQANNCSA 120
ENSSTINEAG SMLESLTVKS NMLVRDSLVS CTRPYETSCG LGIIPEFGAR GTHHPGSSSS 180
AEAEQMHQAE PKVVRRQADG HAAVLHSLFD SVDLDVRPPA LVSSDSSSCV PLCNHDKDHQ 240
TASLCRDEVQ YTADRDDDEN SSGCTHPSTA GDKGSRPQYI GSHRIRKLLA SKVRKAARNK 300
ICGGMPSKKV CGGMSNKGSK LNLCSKKIPA RRQKVQRTIF KKKKPAHHAT SFAKEMLTGA 360
AGTSFSTEGR NKSSGSDNYH VKLRIKSFNI PEVFINVPEN ATIGSLKKTV MDVVNSIMQG 420
GLRVGVLLQG KDIQDDNKTL RQAGICHDKK LNNIDFTLEC EGGQDSPSGV VKPEQMDLLS 480
ADVVEPLARM KCEEHFPETV GDDNQQRTPP YRSRSLSDLY SVVHPVEMAS QDTSTSSQAI 540
VPVAPSDDGA LAIVPLCSVR RSETGQRRTR MPFTVDEVAA LVEAVELIGT GRWRAVKMHA 600
FEHVEHRTYV DLKDKWKTLV HTASISPQQR RGEPVPQELL DRVLAAQAYW SEHPKIRGKA 660
PLPAICSA*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 330 | 344 | RRQKVQRTIFKKKKP |
| Functional Description ? help
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| Source |
Description |
| UniProt | Binds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HF679454 | 0.0 | HF679454.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB48 protein. |
| Publications
? help Back to Top |
- Yu EY, et al.
Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.
J. Biol. Chem., 2000. 275(31): p. 24208-14
[PMID:10811811] - Hong JP, et al.
Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.
Plant Cell, 2007. 19(6): p. 1770-81
[PMID:17586654] - Ko S, et al.
Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.
Biochemistry, 2009. 48(5): p. 827-38
[PMID:19152316] - Mukherjee K,Pandey DM,Vidyarthi AS
In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.
Interdiscip Sci, 2015.
[PMID:25663113] - Mukherjee K,Pandey DM,Vidyarthi AS
In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study.
Interdiscip Sci, 2015. 7(3): p. 275-86
[PMID:26289405]
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