PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G135900.1.p | ||||||||
Common Name | LOC101781147, SETIT_009551mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 669aa MW: 72777.6 Da PI: 9.0677 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.2e-07 | 570 | 619 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r+++T +E lv+av++ G+g+W+++ + ++Rt ++k++w ++ Seita.7G135900.1.p 570 RMPFTVDEVAALVEAVELIGTGRWRAVKMHAFehvEHRTYVDLKDKWKTL 619 789************************999989999***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.29E-7 | 376 | 451 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 8.873 | 381 | 445 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 14.63 | 565 | 624 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-7 | 569 | 622 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-10 | 570 | 620 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.89E-15 | 572 | 651 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.57E-15 | 572 | 621 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MVMRKRSDSG SRGRRTATMP RVPNSARGKR TTRKKKDEMC AFDLLATVAG TLLADQDISN 60 NVPNTSGAAK AKNKKAVKEE HRDEILPLNN MAVEKDCCNG CVVGSGGICA FPRQANNCSA 120 ENSSTINEAG SMLESLTVKS NMLVRDSLVS CTRPYETSCG LGIIPEFGAR GTHHPGSSSS 180 AEAEQMHQAE PKVVRRQADG HAAVLHSLFD SVDLDVRPPA LVSSDSSSCV PLCNHDKDHQ 240 TASLCRDEVQ YTADRDDDEN SSGCTHPSTA GDKGSRPQYI GSHRIRKLLA SKVRKAARNK 300 ICGGMPSKKV CGGMSNKGSK LNLCSKKIPA RRQKVQRTIF KKKKPAHHAT SFAKEMLTGA 360 AGTSFSTEGR NKSSGSDNYH VKLRIKSFNI PEVFINVPEN ATIGSLKKTV MDVVNSIMQG 420 GLRVGVLLQG KDIQDDNKTL RQAGICHDKK LNNIDFTLEC EGGQDSPSGV VKPEQMDLLS 480 ADVVEPLARM KCEEHFPETV GDDNQQRTPP YRSRSLSDLY SVVHPVEMAS QDTSTSSQAI 540 VPVAPSDDGA LAIVPLCSVR RSETGQRRTR MPFTVDEVAA LVEAVELIGT GRWRAVKMHA 600 FEHVEHRTYV DLKDKWKTLV HTASISPQQR RGEPVPQELL DRVLAAQAYW SEHPKIRGKA 660 PLPAICSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2roh_A | 3e-47 | 542 | 651 | 3 | 112 | Telomere binding protein-1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 330 | 344 | RRQKVQRTIFKKKKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G135900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679454 | 0.0 | HF679454.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB48 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975948.1 | 0.0 | telomere-binding protein 1 | ||||
Swissprot | Q9LL45 | 0.0 | TBP1_ORYSJ; Telomere-binding protein 1 | ||||
TrEMBL | K3Y5R2 | 0.0 | K3Y5R2_SETIT; Uncharacterized protein | ||||
STRING | Si009551m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10824 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 2e-60 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G135900.1.p |
Entrez Gene | 101781147 |
Publications ? help Back to Top | |||
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