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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.7G108100.1.p |
Common Name | LOC101783298, SETIT_009558mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
ARF |
Protein Properties |
Length: 664aa MW: 73423.8 Da PI: 5.6696 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.7G108100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 77 | 2e-24 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+k+lt sd++++g +++ +++aee+ ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F+
Seita.7G108100.1.p 128 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPKRHLLTTGWSVFVSSKRLVAGDAFIFM-- 215
99*****************************7556666.59************************************************.. PP
SSSEE..EEEEE- CS
B3 86 grsefelvvkvfr 98
+ +++el+v+v+r
Seita.7G108100.1.p 216 RGENGELRVGVRR 228
449999*****97 PP
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2 | Auxin_resp | 100 | 3.1e-33 | 254 | 339 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83
a+ha+st++ F+v+Y+Pr+s+s+F+v+v+k+++a k+k+svGmRfkm+fe+++++err+sGt+v++ ++ + W +S WrsLk
Seita.7G108100.1.p 254 ASHAISTGTLFSVFYKPRTSRSDFIVSVNKYLEAKKQKISVGMRFKMRFEGDEAPERRFSGTIVDIGSlpaMSKSLWADSDWRSLK 339
789*************************************************************997622267778********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 664 aa
Download sequence Send
to blast |
MAAAMDVANP GAAASSGMSS DALYRELWHA CAGPLVTVPR QGERVYYFPQ GHMEQLEAST 60 HQQLDQYLPM FNLPSKILCS VVNVELRAEA DSDEVYAQIM LQPEADQSEL TSPDPELQEP 120 EKCTAHSFCK TLTASDTSTH GGFSVLRRHA EECLPQLDMS QNPPCQELVA KDLHGTEWHF 180 RHIFRGQPKR HLLTTGWSVF VSSKRLVAGD AFIFMRGENG ELRVGVRRLM RQVNNMPSSV 240 ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSDFIVS VNKYLEAKKQ KISVGMRFKM 300 RFEGDEAPER RFSGTIVDIG SLPAMSKSLW ADSDWRSLKV QWDEPSSILR PDRISPWEVE 360 PLDAANPQSP QPPLRNKRAR PLASPSMVAE LPSGFGLWKS PTDSARTLSF SEPQRARELF 420 PSIPPSAFSS SSNVSFNSKN EPSMLSSQFY WSARDTRADS CAASTNTVIV EKKQEPSSGG 480 CRLFGIDICS AEEEVLPVVT APGLGYDQTA ASVELNSDKL SQLSDVNNSD AQAASSEPSP 540 LESQSRQVRS CTKVIMQGMA VGRAVDLTKL SGYSDLCHKL EEMFDIQGEL GSTLKKWRVI 600 YTDDEDDMML VGDDPWNEFC SMVKRIYICT YEEAKKLTSK SKLPGNSDTS KLSDVNSPSE 660 WVI*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |