PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G055100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 418aa    MW: 46878 Da    PI: 9.8229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G055100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44e-16196277587
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +++s  ++ +  vl   f++++g+ ++++++l+  +e + sW v+     ++gr y+l +GW+ F+++n+LkegD+++F ++++
  Seita.7G055100.1.p 196 FIRSPLTTDNTCVLATAFCDAIGLWEPCTIMLRTSTEGNGSWVVRG--LPCKGRsYLLVQGWRLFCQENRLKEGDICTFNVIET 277
                         677888899999*************99976666666777*******..6666666************************97764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.964172IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166192288IPR003340B3 DNA binding domain
PfamPF023625.1E-12196277IPR003340B3 DNA binding domain
SuperFamilySSF1019361.88E-14202287IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-15205288IPR015300DNA-binding pseudobarrel domain
CDDcd100173.99E-7208272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MPSSGDDGAA ASAKHLRVLL RFTSGSGAIG DGAFLGRGWP ELAEACGFAA GWLLVLRRRG  60
RGVLTVKAFD DTRCLWDLGA PAPPAANALL LRYEGNMVFT VKVFGSDGFQ RDSKHQQREQ  120
LKIFYSSTLL HSEKLQQAQY VSIQKHRRKN RTSIGRSSIY KIGPPSWIKK QINTNTTSYF  180
CQQLLFHYGE IEANIFIRSP LTTDNTCVLA TAFCDAIGLW EPCTIMLRTS TEGNGSWVVR  240
GLPCKGRSYL LVQGWRLFCQ ENRLKEGDIC TFNVIETTMW DVIITRHKEK MNQFCDVQQG  300
TPKSKKYMSS TDAKKRVQGS MTYLNKARTK GAFEIGPPAW IKEINTSIIE NQQLNLSLPF  360
CEAIGLQQHC TITLKTSTRS TKFFLENGIK LGHVCTMQII EITLWNVIID RREAGTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G055100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825227.11e-133putative B3 domain-containing protein Os04g0347400
TrEMBLA0A368RSN60.0A0A368RSN6_SETIT; Uncharacterized protein
STRINGSi011653m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.11e-06B3 family protein