PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Seita.7G029600.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 1180aa MW: 126750 Da PI: 6.2502

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G029600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.8e-09	449	491	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE +++ + ++ +G++ +k+I++ + ++t+ +c++++ k+ Seita.7G029600.1.p 449 AWSQEEKDIFSEKITTFGTD-FKKISSFLS-HKTPTDCIEYYSKH 491 7*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	13.858	445	496	IPR017884	SANT domain
SMART	SM00717	4.1E-9	446	494	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.87E-10	448	494	IPR009057	Homeodomain-like
CDD	cd00167	4.41E-6	449	491	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-6	449	493	IPR009057	Homeodomain-like
Pfam	PF13921	2.9E-6	450	499	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1180 aa Download sequence Send to blast
MNRGFPWSPY GWGPSYWNQN QNQQQWAWHV RDPYWNQRTR FSNVGWNAGV PQPGGLMGHP 60 SYNSPRPLGI QRDVAPMHYF CRPPRPPPPQ RGRVSPGGQS SNSSGQHRGR DLDRDAGKGL 120 LGPGDDPSSQ RGETPFLPPK KRAEFKSPEL HSGQHGNGSD DNSSKSATEK PLDPVQETPD 180 PPPASSTKTG LGSLVPPAVS APTPLESPDV DVCMTERNDQ GDVLGLGGYM EKKRLLSKTL 240 FADVEGEVKV TTKKTRLGWG QGLAKYEKQL KQQNGQKLVA DGDNGETGNG AVVYTATAPA 300 SSDRQTPTPD VGGSSNPCNN SLSMTETVTC TATVPISSHG SSPPPAGGGN SDISNSSMST 360 TQGISCPAST HGCSLPSGAH ISYGSNAKST KVQDISHKLI SQPINKIQNS ARMPAIIIRK 420 LQKPREFLNK NILFKEPQTN KLQGSGFKAW SQEEKDIFSE KITTFGTDFK KISSFLSHKT 480 PTDCIEYYSK HYKSVCSKKS NKCVPTTKQS QEKCKNVNDA APYMSGIATV TATKNYKKMK 540 TVEEDLKKPA NQICHESTAH LQSHSLPDKG HHVESTIEEY EHVTGNVLVG EMNAPSLHGM 600 NSPTTNSSEA ARLTIPKTEV AEFVSNVDSA TCIIQSYSKV KENVPQPVTS ADHGDGENYQ 660 AGGSSGQGTS EIIKYLSESG QKIPNVTTED SQTISGEENP ELCAVSKECN DAAEHSWNDD 720 TETNSNTHND NNAPSDMENP TNDNNPCIST NSAELSGHHE LVQPLEDSEA LKIGSKENND 780 KAIRDEKNPE HSIASKEGSG ILLGCIVNSQ RDKEVVDIIS SPEGSDLNVP PTLASLGASN 840 NSHLSSTSSS AALQTVYAKS SRGEVDMDLN LPLHVAPPDL ASVALDSNRA EASMDLHEPR 900 QTIDVAAIME HELSIRARET IDVGGDSEAA NDVTHVQEIH QSSQTTVAET SHHPANQPGC 960 IMLFGQVIYQ APSSSGTNPT SSQGNQIVAS SRDIPSETVV PFRAGSGQLY PSGPSIIWRS 1020 APVNLGQQTV LSNNTMNLDQ QAVLSNNTMN LGQQAVLSNT TMPYGSTSGA AWRPLQLRNS 1080 ALVNMSQQRQ YVHMMMQYSM MRGAVPYHLR QESSSSSGGG LINFNNFNPG QQQWPSNILD 1140 TSRVVMGYPC LPGSTQDQAP TAIMPSGINI EGASTSNTG*

Sequence ? help Back to Top

Protein Sequence Length: 1180 aa Download sequence Send to blast

MNRGFPWSPY GWGPSYWNQN QNQQQWAWHV RDPYWNQRTR FSNVGWNAGV PQPGGLMGHP  60
SYNSPRPLGI QRDVAPMHYF CRPPRPPPPQ RGRVSPGGQS SNSSGQHRGR DLDRDAGKGL  120
LGPGDDPSSQ RGETPFLPPK KRAEFKSPEL HSGQHGNGSD DNSSKSATEK PLDPVQETPD  180
PPPASSTKTG LGSLVPPAVS APTPLESPDV DVCMTERNDQ GDVLGLGGYM EKKRLLSKTL  240
FADVEGEVKV TTKKTRLGWG QGLAKYEKQL KQQNGQKLVA DGDNGETGNG AVVYTATAPA  300
SSDRQTPTPD VGGSSNPCNN SLSMTETVTC TATVPISSHG SSPPPAGGGN SDISNSSMST  360
TQGISCPAST HGCSLPSGAH ISYGSNAKST KVQDISHKLI SQPINKIQNS ARMPAIIIRK  420
LQKPREFLNK NILFKEPQTN KLQGSGFKAW SQEEKDIFSE KITTFGTDFK KISSFLSHKT  480
PTDCIEYYSK HYKSVCSKKS NKCVPTTKQS QEKCKNVNDA APYMSGIATV TATKNYKKMK  540
TVEEDLKKPA NQICHESTAH LQSHSLPDKG HHVESTIEEY EHVTGNVLVG EMNAPSLHGM  600
NSPTTNSSEA ARLTIPKTEV AEFVSNVDSA TCIIQSYSKV KENVPQPVTS ADHGDGENYQ  660
AGGSSGQGTS EIIKYLSESG QKIPNVTTED SQTISGEENP ELCAVSKECN DAAEHSWNDD  720
TETNSNTHND NNAPSDMENP TNDNNPCIST NSAELSGHHE LVQPLEDSEA LKIGSKENND  780
KAIRDEKNPE HSIASKEGSG ILLGCIVNSQ RDKEVVDIIS SPEGSDLNVP PTLASLGASN  840
NSHLSSTSSS AALQTVYAKS SRGEVDMDLN LPLHVAPPDL ASVALDSNRA EASMDLHEPR  900
QTIDVAAIME HELSIRARET IDVGGDSEAA NDVTHVQEIH QSSQTTVAET SHHPANQPGC  960
IMLFGQVIYQ APSSSGTNPT SSQGNQIVAS SRDIPSETVV PFRAGSGQLY PSGPSIIWRS  1020
APVNLGQQTV LSNNTMNLDQ QAVLSNNTMN LGQQAVLSNT TMPYGSTSGA AWRPLQLRNS  1080
ALVNMSQQRQ YVHMMMQYSM MRGAVPYHLR QESSSSSGGG LINFNNFNPG QQQWPSNILD  1140
TSRVVMGYPC LPGSTQDQAP TAIMPSGINI EGASTSNTG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G029600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368RRQ9	0.0	A0A368RRQ9_SETIT; Uncharacterized protein
STRING	Pavir.Gb02524.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20991	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	4e-11	MYB family protein

Link Out ? help Back to Top
Phytozome	Seita.7G029600.1.p