PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G212000.1.p
Common NameLOC101766553, SETIT_013155mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 1100aa    MW: 121652 Da    PI: 6.5899
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G212000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3681.3e-21132233199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +
  Seita.6G212000.1.p 132 FCKTLTASDTSTHGGFSVPRRAAERIfphldfsM-QPPA-QELQARDLHDSIWTFRHIYRGQPKRHLLTTGWSLFVSGKKLLAGDSVLFIR 220
                         99*****************************954.4444.49************************************************5 PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                         d   +++l+++++r+
  Seita.6G212000.1.p 221 D--ARQQLLLGIRRA 233
                         4..566679999987 PP
2Auxin_resp118.65e-39258341183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+++
  Seita.6G212000.1.p 258 AAHAAANNSQFTVFYNPRASPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNIQ 341
                         79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-40122261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-38125247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-17131221No hitNo description
PROSITE profilePS5086311.448132234IPR003340B3 DNA binding domain
PfamPF023621.2E-19132233IPR003340B3 DNA binding domain
SMARTSM010191.5E-19132234IPR003340B3 DNA binding domain
PfamPF065074.4E-34258341IPR010525Auxin response factor
PfamPF023098.5E-109781066IPR033389AUX/IAA domain
PROSITE profilePS5174527.0029811065IPR000270PB1 domain
SuperFamilySSF542772.81E-89851060No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1100 aa     Download sequence    Send to blast
MAAPGTSSGG AGGEGGGGGT KVNQELWYAC AGPLVALPPA GSLVVYFPQG HSEQVAASMG  60
KDADAKIPSY PNLPSKLICI LNSVTMHADT DTDEVYARMT LQPVSNVTQC DKETLLASEL  120
ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPH LDFSMQPPAQ ELQARDLHDS  180
IWTFRHIYRG QPKRHLLTTG WSLFVSGKKL LAGDSVLFIR DARQQLLLGI RRANRQPVNL  240
SSSVLSSDSM HIGILAAAAH AAANNSQFTV FYNPRASPSE FVIPFAKYQK AVYSNQLSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNI QVAWDEAAPS ERRTRVSLWD  360
IEPVIAPFFI YPSPLFTAKR PRQPGITDDE TADMENLFKR TMPWFGEEIY KKDLNTQNNL  420
VPGLSLVQWM QQNPSLTSTV VQPELLNSLA GKPVQTLAAA DMSRQISFQP QFLQQNNIQF  480
NTSLLPPQNQ QTEQLAKVIA TPNQSGSVIV SQKVVQDCNP EQKQHAITQP VQGSQPMISA  540
AQPQFVVQNQ LQQPQVILQA QAQQPQVILQ AQIQQQQPLV QNHTVLHGDL QQAQLLQQQE  600
PHLQQQPQQV QQSVQEQQQI KIQPVQVLNG TNVITQLSDH QMKIQLLKAL QPQQPLIMEQ  660
QKMILDLQHQ MVNSNSQSAA QQCAQVTTQA GGMHSSNTIQ YPTQQKTQPH QPIQDFPRHA  720
VSVANPEIAT SMGTRSLHVP GGVQLLKTED VPSSSTSPPT NNNPVLLQSV PCSSKNQSIL  780
TAAKTPQSSA VVGPTLGQGM KPYESAQQMV MIPKGAEQKP VTRQDYVNNT PQMDYLDTSS  840
SATSVCLSQA DGSLHQNFPP SSFNQHQLLR ETVPDSEFEV TDPGNNFLFG VNIDGHLDSL  900
NADALLANNF ETEKYMDHMP GHGISNYISS KDSQQELSSS MISHSFGVAD IAFNSIDSSI  960
NDAPFLNRNS RPPAPAHQRI RTYTKVHKRG AVGRSIDINR YSGYDELKHD VARMFGIEGQ  1020
LSDQNRGGWK LVYEDHEKDV LLVGDDPWED FVNCVRCIRI LSPQEEMQMR LASDFGDSFL  1080
HNQACSSSDG GHPWRVTGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1592236251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G212000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973925.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLK3YFY70.0K3YFY7_SETIT; Auxin response factor
STRINGSi013155m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]