PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G206100.1.p
Common NameLOC101782059, SETIT_013408mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 636aa    MW: 66073.3 Da    PI: 9.9441
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G206100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.4e-102372445
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwq 45
                        W t+E++ll++av+++G+ +W+++a +++         ++t+  c+++++
  Seita.6G206100.1.p 23 WGTWEELLLACAVRRHGTASWDSVAMEVQsrcpaaaaPRLTPTGCRLHFR 72
                        *****************************999999999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00321977IPR001005SANT/Myb domain
PfamPF002494.6E-92372IPR001005SANT/Myb domain
CDDcd001672.80E-52374No hitNo description
Gene3DG3DSA:1.20.920.101.3E-13283422IPR001487Bromodomain
SMARTSM002972.2E-11291402IPR001487Bromodomain
SuperFamilySSF473701.22E-14295398IPR001487Bromodomain
PfamPF004392.2E-10308387IPR001487Bromodomain
PROSITE profilePS5001410.732310383IPR001487Bromodomain
CDDcd043698.59E-14313397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MTARSDDPGV SPGTSAAAGG EIWGTWEELL LACAVRRHGT ASWDSVAMEV QSRCPAAAAP  60
RLTPTGCRLH FRLLHRRFAA GAGENGGGGD VDEDPDAAAA DGWVEELRKL RVAELRREVE  120
RYDLSIGSLQ SKVKRLKEER ERSISGEANL PAVKAEEGEE PAAGKGSLED DAGGGEDRVS  180
GGESGRSCKE SNSSDLKRPV HDAGTASAAV DGAAAAKEEG EEEEAAAGES LAVKREEVSG  240
ESVARSKETD KESSDVQSSA SPSRRREREG GGGAGVEEAE AEEASASTSA RAALPAAEAE  300
ALLAFLESVR TSKPGSVFER RLESQDDAKY RSTIRRHVDL ETVRSKLEGG GGACYSSASE  360
FYRDLLLLCT NALVFFPRGS PEHSAATRTR ALVSKHIPAS LRKDQPGTSG KAAAPASKKA  420
KAEADVGSLL EKTAPIIVCR KRSSIAKAAA AAAKEEKGEK GETDKEENEA SKKAGGTKDK  480
ARGLRTNKTR AAPVRKAAPN QKTEDNGSDS DAPAEGTKKP GKKGGSSAVG SGAGVAKKRN  540
AVNFLNRMKQ GSAPSTERVS LLETLKLSAA AEQKKAGKGS EGKKEPAGGS GSKRGRGTPP  600
GRRNIGRPPK RAAAPPSPPP AKRARGGGTK RGGRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G206100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702097.10.0uncharacterized protein LOC101782059
TrEMBLK3YGP00.0K3YGP0_SETIT; Uncharacterized protein
STRINGSi013408m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.19e-20DNA-binding bromodomain-containing protein