PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G176400.1.p
Common NameLOC101754251, SETIT_014954mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 356aa    MW: 36870.9 Da    PI: 7.5074
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G176400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18170224256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Seita.6G176400.1.p 170 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 224
                         788899***********************************************98 PP
2HD-ZIP_I/II1283.9e-41170260192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al+een+rL+ke +eLr +l
  Seita.6G176400.1.p 170 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALTEENRRLHKELAELR-AL 259
                         69*************************************************************************************9.66 PP

         HD-ZIP_I/II  92 k 92 
                         k
  Seita.6G176400.1.p 260 K 260
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-18152224IPR009057Homeodomain-like
SuperFamilySSF466892.48E-18157227IPR009057Homeodomain-like
PROSITE profilePS5007117.248166226IPR001356Homeobox domain
SMARTSM003894.9E-16168230IPR001356Homeobox domain
PfamPF000468.8E-16170224IPR001356Homeobox domain
CDDcd000867.17E-18170227No hitNo description
PROSITE patternPS000270201224IPR017970Homeobox, conserved site
PfamPF021834.6E-11226260IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.9E-26226269IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MELGLSLGEP AVPDAGRAAP ELGLGLGVGA AGSGHEDGMG SSRAAGNGAG ARWWAAPVDE  60
PEPAVRLSLV SSLGLQWPAA SDGGRSSEAP ARGFDVNRAP SAAASALAAL EDDDEDPAAG  120
ALSSSPNDSG GSFPLDLGRR AAHADGATAR AGGERSSSRA SDEDEGASAR KKLRLSKEQS  180
AFLEESFKEH STLNPKQKAA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE  240
ALTEENRRLH KELAELRALK TAPPFYMHLP ATTLSMCPSC ERVASNPGSA PTSAPASSTP  300
PATATTNNNN SGAAAAAAPA RGEHRPSSFA ALFAATRSFP LAPHRRPPAP ASNCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218226RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G176400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411960.0AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702116.10.0homeobox-leucine zipper protein HOX27
SwissprotA2YW031e-129HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotQ6YPD01e-129HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLK3YL330.0K3YL33_SETIT; Uncharacterized protein
STRINGSi014954m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-69homeobox from Arabidopsis thaliana