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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.6G075700.1.p |
Common Name | SETIT_014280mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
LSD |
Protein Properties |
Length: 169aa MW: 17842.4 Da PI: 8.946 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.6G075700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 24.5 | 4.7e-08 | 16 | 39 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
C+gC+ +L Y rGA+ V+C+ C+t
Seita.6G075700.1.p 16 CSGCKRVLEYRRGATGVCCPGCNT 39
***********************9 PP
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2 | zf-LSD1 | 23.7 | 8.2e-08 | 55 | 77 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23
CggC t+L Y rGA ++RC+ C
Seita.6G075700.1.p 55 CGGCFTMLVYNRGAANIRCPHCG 77
**********************7 PP
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3 | zf-LSD1 | 25.6 | 2.1e-08 | 93 | 117 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Crt+L+YP+GA+ V C+ C V
Seita.6G075700.1.p 93 CGHCRTTLAYPPGASTVGCPTCRCV 117
**********************876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 169 aa
Download sequence Send
to blast |
MHRHLAAKCM QDQLICSGCK RVLEYRRGAT GVCCPGCNTF TAANPSGSEM SELVCGGCFT 60 MLVYNRGAAN IRCPHCGRVN STRSANQIGH LSCGHCRTTL AYPPGASTVG CPTCRCVNPV 120 RNNNSGGSAR PAQSDARPQT VLVENPKTLD EKGKLVSNVA VGVTSWKR*
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Functional Description ? help
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Source |
Description |
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |