PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G468400.1.p
Common NameSETIT_005025mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 383aa    MW: 41296.8 Da    PI: 5.4275
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G468400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.7e-31126182258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         +Dgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+e+ +++ +tYeg H h
  Seita.5G468400.1.p 126 EDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSTEEADTLLVTYEGLHLH 182
                         8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-28121183IPR003657WRKY domain
SuperFamilySSF1182902.35E-25124183IPR003657WRKY domain
SMARTSM007741.1E-34125184IPR003657WRKY domain
PROSITE profilePS5081125.775126185IPR003657WRKY domain
PfamPF031063.0E-24126182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDMEEEQLLQ QGSAAVPPPL ESSNYWPSSS SSEEAAAAED DGPRRRRESM VNRLISTVYS  60
GPTISDIESA LSFTGGDHLV AAPPPPAVMD STTSSPVVFS PEKVLSKMEN KYTLKIKTCG  120
NGLAAEDGYK WRKYGQKSIK NSPNPRSYYR CTNPRCNAKK QVERSTEEAD TLLVTYEGLH  180
LHYTFNYSPQ QHHLLLPPPP PSCSSKKPKL HPRGGPLADA DAGAAILQNS SSSPAQEESM  240
MSSSTTSRSY YAPALGASSP PSSEAAAAAA CYFDNATTSN NEDGLLGEVQ FLRQQQQQQD  300
YCCFVDFEEQ HRRQRMANSN SSNGGGLLED VVPLLVRRPC ISSSSSSPGI TTTAGSPSPS  360
LSTSSSVSWN PYIDMAMLSN IF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181271821671WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G468400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332404e-92BT033240.1 Zea mays full-length cDNA clone ZM_BFb0071M13 mRNA, complete cds.
GenBankBT0624334e-92BT062433.1 Zea mays full-length cDNA clone ZM_BFb0296J15 mRNA, complete cds.
GenBankKJ7275734e-92KJ727573.1 Zea mays clone pUT5433 WRKY transcription factor (WRKY120) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971427.10.0probable WRKY transcription factor 35
TrEMBLA0A368RGN80.0A0A368RGN8_SETIT; Uncharacterized protein
STRINGSi005025m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-40WRKY DNA-binding protein 49