 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Seita.5G452200.1.p |
Common Name | SETIT_002428mg |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
MYB_related |
Protein Properties |
Length: 295aa MW: 32309.7 Da PI: 4.4005 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G452200.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 27 | 1.1e-08 | 51 | 87 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
+WT +E +ll++a + + g+ W+ Ia+++ ++t +q+
Seita.5G452200.1.p 51 NWTDQETLLLLEALEIFKGKEWDEIAEHVV-TKTKEQI 87
8*****************************.***9997 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MTRRRRANRG EEVSRDSSCR DSHVGKFDEG MSNADFILME YTEVPGSGGS NWTDQETLLL 60 LEALEIFKGK EWDEIAEHVV TKTKEQICQT GTFDVPEEMD VDDNAEGKES TDGKTFKKAD 120 ANSSETGTKL ADQSVSAKED TMNPGEKTFK KADANPSCCN SLRAISEISP ALQLATGHCF 180 ILPDPPSNLE DPTSNFSPCT GGVCQGGAGG TQNVNATDKD RSEREESALA LEKERATFTS 240 QKEHMELSNT KESFVEGPQA EVIILSYYVL QRSIIINIYY IYASMSNLCV HNMG*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT053786 | 3e-64 | BT053786.1 Zea mays full-length cDNA clone ZM_BFb0168L21 mRNA, complete cds. |
GenBank | BT066330 | 3e-64 | BT066330.1 Zea mays full-length cDNA clone ZM_BFb0179F16 mRNA, complete cds. |
GenBank | EU952227 | 3e-64 | EU952227.1 Zea mays clone 1231171 mRNA sequence. |