PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G371200.1.p | ||||||||
Common Name | LOC101772576, SETIT_003159mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YB | ||||||||
Protein Properties | Length: 164aa MW: 17708.8 Da PI: 6.1155 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 187.2 | 1.2e-58 | 16 | 112 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedyv+plk+yl+kyr Seita.5G371200.1.p 16 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYVDPLKIYLQKYR 106 69***************************************************************************************** PP NF-YB 92 elegek 97 e+eg++ Seita.5G371200.1.p 107 EMEGDS 112 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-54 | 14 | 121 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.38E-41 | 19 | 115 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-28 | 22 | 86 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.5E-22 | 50 | 68 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 53 | 69 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.5E-22 | 69 | 87 | No hit | No description |
PRINTS | PR00615 | 4.5E-22 | 88 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MADDGGSHEG GGGGGVREQD RFLPIANISR IMKKAVPANG KIAKDAKETL QECVSEFISF 60 VTSEASDKCQ KEKRKTINGD DLLWAMATLG FEDYVDPLKI YLQKYREMEG DSKLSTKAGE 120 GSVKKDAISP HGGTSSSSNQ LVQHGVYNQG MGYMQPQYHN GDT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 7e-49 | 15 | 107 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 7e-49 | 15 | 107 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G371200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975758 | 0.0 | EU975758.1 Zea mays clone 499728 nuclear transcription factor Y subunit B-3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970483.1 | 1e-119 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | P25209 | 1e-90 | NFYB_MAIZE; Nuclear transcription factor Y subunit B | ||||
TrEMBL | K3XMN6 | 1e-118 | K3XMN6_SETIT; Uncharacterized protein | ||||
STRING | Si003159m | 1e-119 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53340.1 | 7e-72 | nuclear factor Y, subunit B10 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G371200.1.p |
Entrez Gene | 101772576 |
Publications ? help Back to Top | |||
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