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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G321300.1.p |
Common Name | LOC101782847, SETIT_000545mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
ARF |
Protein Properties |
Length: 686aa MW: 74769.3 Da PI: 7.2357 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G321300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 77.8 | 1.2e-24 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F
Seita.5G321300.1.p 128 FCKTLTASDTSTHGGFSVPRRAAEDCfppldynQLRP--SQELVAKDLHGAKWKFRHIYRGQPRRHLLTTGWSSFVHKKKLVSGDAVLFL- 215
99****************************9876665..459************************************************. PP
-SSSEE..EEEEE-S CS
B3 85 dgrsefelvvkvfrk 99
+ +++el+++v+r+
Seita.5G321300.1.p 216 -RGDDGELRLGVRRA 229
.3489999***9986 PP
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2 | Auxin_resp | 91.6 | 1.4e-30 | 256 | 334 | 3 | 82 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82
++++++svF++ YnPra++se++++++k+ k+l+++v++G R+ ++ +ed+serr sG+vvg+s++d+v+Wp+SkWrsL
Seita.5G321300.1.p 256 DSLEHRSVFHISYNPRATASEYIIPYRKFIKSLNRPVCIGARINFQCHNEDVSERR-SGMVVGISEVDSVKWPGSKWRSL 334
57899***************************************************.9********************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 686 aa
Download sequence Send
to blast |
MGIDLNMVDV GGEDRRPPLG VCRELWHACA GPVVSLPRRG SLVVYLPQGH LAAAGGGDVT 60 ADLPPHVVCR VADVELCADA ATDEVYARLA LVAEGEAFGR NVRGAGVEGD DDMEDLDAER 120 KSRMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGAKWKF 180 RHIYRGQPRR HLLTTGWSSF VHKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFED 240 FSSDSAKRHT LSDVYDSLEH RSVFHISYNP RATASEYIIP YRKFIKSLNR PVCIGARINF 300 QCHNEDVSER RSGMVVGISE VDSVKWPGSK WRSLLVRWED GSECNGQDRV SPWEIEIVGG 360 SVSVAHSLSA SSSKRTKLCP QGNLDVPTMY VAGNGCTDSV ETGKLPRVLQ GQELMGFRTH 420 RVTCAPQTAE VAKFQSSDAS RFLTNARSCM LSGPTSRLAV QNTSFTYQSV GFNESIGFSE 480 VLQGQEISQA VPMFQGMMSE ACSVKGGYGL RGYMRTPTTV DGLSATAQEC SLTLSTPPAA 540 QVHSPHPNHM FNQTVASQLG LASKTAGEVG NSSQPRPFEM LWEAQTRSQH GRPGQISLDQ 600 FETRRASAPG DAAKTGSGGR EVRKTSCRLF GFSLTEKILP ADDDSVKEVS YEAECQNPRM 660 LDLFGYNRST PNAALPALCA APFGM*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |