PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G233900.1.p
Common NameLOC101756106, SETIT_002019mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 356aa    MW: 38198.3 Da    PI: 6.9652
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G233900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32205262259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  Seita.5G233900.1.p 205 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 262
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-34189264IPR003657WRKY domain
SuperFamilySSF1182907.19E-29197264IPR003657WRKY domain
PROSITE profilePS5081131.066199264IPR003657WRKY domain
SMARTSM007741.6E-37204263IPR003657WRKY domain
PfamPF031062.1E-25205262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSSGGGGGGG GGDHHGVYHQ HGHGGHLARA DGAEYVFGNS DMESFFFNQP ASGGVGGGSR  60
AGADELMPPY TNITDYLQGF LDPSGLARHL DAPCPAEDGQ VKHELSLDVM SHDSQGTSGA  120
AGEGAVALLT PNSSVSLSSS EREGEGQPRR CKKKAEDEVA AEGDEKDQED GENSTKANKP  180
KKKAEKRQRQ PRVAFLTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TTPKCGVKKR  240
VERSYQDPST VITTYEGQHT HHSPASLRAG GAHLFMSGAH GLPPHLMPSA GGFRPDLMSM  300
MHPIHTGANP NMFLPSMPPP QMPTPSPPPP PLQQHHFSDY ALLQDLFPST MPNNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-291972651078Probable WRKY transcription factor 4
2lex_A3e-291972651078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G233900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969225.10.0probable WRKY transcription factor 71
TrEMBLK3XJE60.0K3XJE6_SETIT; Uncharacterized protein
STRINGSi002019m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-44WRKY DNA-binding protein 71