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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G133800.1.p |
Common Name | LOC101779362, SETIT_001941mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
MYB_related |
Protein Properties |
Length: 367aa MW: 38549.3 Da PI: 9.246 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G133800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 35.4 | 2.4e-11 | 110 | 154 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+ E+ ++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky
Seita.5G133800.1.p 110 PWTEGEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 154
8*******************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MTRRCSHCSN NGHNSRTCPA RSGGGGGGGG VRLFGVRLTT APAPAAMKKS ASMSCIASSL 60 GGGSGGSSPP AGGDAGGRGG GDGGAGYVSD DPAHASCSTN GRAERKKGTP WTEGEHRMFL 120 MGLQKLGKGD WRGISRNFVV SRTPTQVASH AQKYFIRQSN SSRRKRRSSL FDMVPEMPMD 180 ESPAAVEQFT LQNTQDEAAS SNQLPALHLG QQKKVEVAKQ LPTFQLSQHE ESEYAEPSLP 240 LPDLEMNSGA PFKTISVPAV PAFYPTLVPV PLTLWPPSVA HVEESGTTHE VLKPTPLNGK 300 EAVKADDVVG MSKLSIGEAS SVSMEPTALS LQLIGSTDAR QSAFHVSPPM NRPELSKRNS 360 SPIHAV*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT038270 | 0.0 | BT038270.1 Zea mays full-length cDNA clone ZM_BFb0221P08 mRNA, complete cds. |
GenBank | EU965259 | 0.0 | EU965259.1 Zea mays clone 284869 myb-related transcription activator mRNA, complete cds. |