PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G096800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family RAV
Protein Properties Length: 301aa    MW: 33104.4 Da    PI: 10.0242
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G096800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.81.7e-103583155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        s++kGV   + +grW A+I+d      r +r++lg+f  +  Aa+a + a+ +++g
  Seita.5G096800.1.p 35 SRFKGVVPQP-KGRWGAQIYD------RhARVWLGTFPDEAIAARAFDVAAIRYRG 83
                        689***9888.7*********......44**********99*************98 PP
2B391.94.8e-29150241185
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+kv tpsdv+k++rlv+pk++ae+h       +    +++ l +ed +g++W ++++y++ s++yvltkGW++Fv+++gL++gD+v F+ 
  Seita.5G096800.1.p 150 FEKVVTPSDVGKLNRLVVPKQHAEKHfplkrapETAAGKGVLLNFEDGEGKVWPFRYSYWNISQSYVLTKGWSRFVREKGLRAGDTVAFSQ 240
                         99*************************99887755556999************************************************94 PP

                         - CS
                  B3  85 d 85 
                         +
  Seita.5G096800.1.p 241 S 241
                         3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.53E-203592No hitNo description
PfamPF008476.1E-53583IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-153592IPR016177DNA-binding domain
SMARTSM003801.4E-223697IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-193692IPR001471AP2/ERF domain
PROSITE profilePS5103220.0993691IPR001471AP2/ERF domain
PRINTSPR003671.5E-63748IPR001471AP2/ERF domain
PRINTSPR003671.5E-67393IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.1E-37145245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-29147241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-29148238No hitNo description
SMARTSM010192.9E-22150256IPR003340B3 DNA binding domain
PROSITE profilePS5086314.212150257IPR003340B3 DNA binding domain
PfamPF023622.3E-26150240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MESAGTAVAF AASNSSQESG ADELAALQLL SRQPSRFKGV VPQPKGRWGA QIYDRHARVW  60
LGTFPDEAIA ARAFDVAAIR YRGRDAVTNF PEERASAGEL AFLAAHSKAE VVDMLRKHTY  120
AADLRPEVRR GRGMGARAQP TPPWARKPLF EKVVTPSDVG KLNRLVVPKQ HAEKHFPLKR  180
APETAAGKGV LLNFEDGEGK VWPFRYSYWN ISQSYVLTKG WSRFVREKGL RAGDTVAFSQ  240
SVYGQDNQLL INYRKTPSWE QDEATADAIA VEARSIKLFG VDIAGGGREA GEGHVEVLER  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4714925413115DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G096800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958120.0FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence.
GenBankFP0968350.0FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818627.11e-166AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-117Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A368R4V30.0A0A368R4V3_SETIT; Uncharacterized protein
STRINGPavir.Eb00701.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-89related to ABI3/VP1 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]