PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G056200.1.p | ||||||||
Common Name | LOC101757057, SETIT_001303mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 473aa MW: 49692.4 Da PI: 7.2578 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.6 | 1.3e-10 | 60 | 86 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C +G+rC+++H++ Seita.5G056200.1.p 60 PGEADCGYYLRTGACGFGERCRYNHPR 86 57899********************96 PP | |||||||
2 | zf-CCCH | 37.3 | 4.7e-12 | 110 | 135 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +f++tGtCk+G++Ck++H++ Seita.5G056200.1.p 110 GQPVCEYFLKTGTCKFGSNCKYHHPK 135 7899********************96 PP | |||||||
3 | zf-CCCH | 39.8 | 7.3e-13 | 155 | 180 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ Seita.5G056200.1.p 155 GEKECSYYMKTGQCKFGSTCKFHHPE 180 7899********************96 PP | |||||||
4 | zf-CCCH | 39.2 | 1.2e-12 | 308 | 334 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ Seita.5G056200.1.p 308 PGQPECQYYMRTGDCKFGATCKYNHPR 334 5789*********************96 PP | |||||||
5 | zf-CCCH | 32 | 2.1e-10 | 357 | 380 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++a++G+C+yG Ck+ H++ Seita.5G056200.1.p 357 QPCAYYAQNGYCRYGVACKYDHPM 380 69********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.676 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-8 | 61 | 86 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 63 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 65 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-7 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.577 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-10 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-7 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-6 | 113 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-6 | 153 | 180 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 153 | 181 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-10 | 155 | 180 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 156 | 180 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 159 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-6 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.263 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-10 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 311 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 313 | 334 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 353 | 380 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 353 | 381 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.03E-5 | 354 | 382 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-8 | 357 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-5 | 357 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MEPPHAEEAA AAGGGGGGGE GGRASPGTGL EGPMLRLGLD GGGEGEDGER EADARLPERP 60 GEADCGYYLR TGACGFGERC RYNHPRDRGG TEFGGGTKNG AAPDFPERQG QPVCEYFLKT 120 GTCKFGSNCK YHHPKQDGSV QSVILNNNGF PLRPGEKECS YYMKTGQCKF GSTCKFHHPE 180 FGGIPVTPGI YPPLQSASVP SPHTYAPLAN WQMGRSPVVP GSYMPGSYTP MMLSSGMVPL 240 QGWSPYPASV NPVASGGAQQ TVQAGPLYGI GHHGSSATIA YGSPYMPYSS STGQSSNNHQ 300 EHGFPERPGQ PECQYYMRTG DCKFGATCKY NHPRDWSAAK SNYMFSPLCL PLRPGAQPCA 360 YYAQNGYCRY GVACKYDHPM GTLGYSSSAL PLSDMPIAPY PLSFSVATLA PSPSSPEYIS 420 TKDPSMNQVA SPVAAPEPVG AVLPKGGFPP DTIMRTQTST TGVGSSSPGG GR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G056200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968830 | 0.0 | EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967811.1 | 0.0 | zinc finger CCCH domain-containing protein 6 | ||||
Swissprot | Q5NAW2 | 0.0 | C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | K3XHD2 | 0.0 | K3XHD2_SETIT; Uncharacterized protein | ||||
STRING | Si001303m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2761 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-121 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G056200.1.p |
Entrez Gene | 101757057 |
Publications ? help Back to Top | |||
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