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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G004300.1.p |
Common Name | LOC101786343, SETIT_000540mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
ARF |
Protein Properties |
Length: 688aa MW: 76878.8 Da PI: 5.6573 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G004300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 69.9 | 3.3e-22 | 116 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+k+ltpsd++++g +++ +++a+e+ +++ + +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v ++
Seita.5G004300.1.p 116 FCKILTPSDTSTHGGFSVLRRHANEClppldmSMP-TPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLIAGDAFVYLRS 205
99****************************96444.45569999*******************************************9944 PP
SSSEE..EEEEE- CS
B3 86 grsefelvvkvfr 98
++++ +v+v+r
Seita.5G004300.1.p 206 --ETGQQRVGVRR 216
..66666999987 PP
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2 | Auxin_resp | 97.1 | 2.5e-32 | 242 | 323 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha++t+s+F v+Y+Pr s+s+++v+++k+++a k+ + vGmRfkm+fe+ed++ +++sGtvv+ dl+p +W++S+W+ Lk
Seita.5G004300.1.p 242 ASHAIKTNSIFLVYYRPRLSQSQYIVSLNKYLEASKIGFNVGMRFKMSFEGEDVPVKKFSGTVVDKGDLSP-QWQGSEWKTLK 323
789********************************************************************.********996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 688 aa
Download sequence Send
to blast |
MAQGREPELF AELWRACAGP LVELPQTDER VFYFLQGHLE QLQEPTDPAL LAEQIKMFQV 60 PNKILCKVVN VELKAETETD EMFAQITLQP DPDQVNLPTL PDPPLPETPR PVVHSFCKIL 120 TPSDTSTHGG FSVLRRHANE CLPPLDMSMP TPTQELITKD LHGSEWRFKH IYRGQPRRHL 180 LTTGWSTFVT SKKLIAGDAF VYLRSETGQQ RVGVRRLVQK QSAMPASVIS SQSMHLGVLA 240 SASHAIKTNS IFLVYYRPRL SQSQYIVSLN KYLEASKIGF NVGMRFKMSF EGEDVPVKKF 300 SGTVVDKGDL SPQWQGSEWK TLKVQWDEAT NLNGPERVSS WEIEPFDAST PTINIPVQQS 360 TKNKRPRETA ESLDIQAMEP TQEFWLSGMP EQHEKAGIGS SEPNCISGHQ VVWTSERAGY 420 SAMSSSVCQN SVVLGNWFKD FNSSSKGASP SLSEISQKLF QVTSNDARVP PWPGLSAYQA 480 EEPSSKLSSN TALCSYQTEE VAPNFSNAVE EKKEPGMFRL FGVNLINHTR NAAASEKMTV 540 GVREISTRTA GSLEDSGQLS ALSKVTKDHT QNVNESPREI QSHQNCTGRT RIKVQMQGNA 600 VGRAIDLVNL HGYPQLISEL DEMFEIKDLS SKEKWKVAFT NDEGDTMEVG DVPWLKFCQT 660 VRKIVIHPIE DESDMDPFLE QDVKTDF*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ldv_A | 1e-148 | 9 | 353 | 19 | 362 | Auxin response factor 1 |
4ldw_A | 1e-148 | 9 | 353 | 19 | 362 | Auxin response factor 1 |
4ldw_B | 1e-148 | 9 | 353 | 19 | 362 | Auxin response factor 1 |
4ldx_A | 1e-148 | 9 | 353 | 19 | 362 | Auxin response factor 1 |
4ldx_B | 1e-148 | 9 | 353 | 19 | 362 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}. |