PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G291500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 233aa    MW: 24176.2 Da    PI: 8.9295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G291500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001391113123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+k+F++   L  H  +H
  Seita.4G291500.1.p  91 YECKTCNKCFPSFQALGGHRTSH 113
                         99**********99998888777 PP
2zf-C2H2110.0013153175123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg +F +   L  H+r+H
  Seita.4G291500.1.p 153 HECSACGATFASGQALGGHMRRH 175
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-991113IPR007087Zinc finger, C2H2
SuperFamilySSF576674.74E-891113No hitNo description
PROSITE profilePS5015711.19891118IPR007087Zinc finger, C2H2
SMARTSM003550.1191113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576674.74E-8148175No hitNo description
PfamPF139129.6E-12152176IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889153175IPR007087Zinc finger, C2H2
SMARTSM003550.041153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MATPPAYIAG AHKQRAKRRR QCSSLPSPAS SSSSHNGSTT TQQEEDEAAD MAKCLILLAQ  60
GPAATVMEPA MPVPVPAPPR PTTTQRPPSS YECKTCNKCF PSFQALGGHR TSHNNDKIKK  120
PRRPEAEAAA AAAVTTTLSL RTAAVAGRPA AAHECSACGA TFASGQALGG HMRRHRPLTA  180
GAAPESVVTA EETSAGGNNV SLELDLNLLP APSTEQEVTS PALATKRTHH FN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G291500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681943.11e-166zinc finger protein ZAT11-like
TrEMBLA0A368QZW91e-166A0A368QZW9_SETIT; Uncharacterized protein
STRINGSi008395m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-23C2H2 family protein