PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G282900.1.p | ||||||||
Common Name | LOC101767052, SETIT_007412mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bZIP | ||||||||
Protein Properties | Length: 158aa MW: 17268.6 Da PI: 8.7263 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 56.7 | 5.3e-18 | 85 | 141 | 3 | 59 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 +++r++r+++NRe+A rsR+RK+a++e+Le++v L eN +Lkk+ +elk eva+l Seita.4G282900.1.p 85 DDRRTIRMMRNRESALRSRARKRAYVENLEKEVRRLVDENLKLKKQCKELKLEVAAL 141 589*************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-14 | 83 | 147 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.8E-16 | 84 | 141 | No hit | No description |
PROSITE profile | PS50217 | 11.519 | 85 | 141 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.3E-15 | 86 | 141 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.19E-12 | 87 | 141 | No hit | No description |
CDD | cd14707 | 2.08E-18 | 87 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MAANYHHYQM AVAAAAAAWR EPDSPQLSFV SGCSSLFSIS TLQDDDDGAV VIAGHALPST 60 PVSLAGFAGD EVDMEVQQVS GGSGDDRRTI RMMRNRESAL RSRARKRAYV ENLEKEVRRL 120 VDENLKLKKQ CKELKLEVAA LVLPTKSSLR RTSSTQF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G282900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033858 | 1e-136 | BT033858.1 Zea mays full-length cDNA clone ZM_BFc0165B20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966480.1 | 1e-113 | protein FD | ||||
Swissprot | Q84JK2 | 1e-14 | FD_ARATH; Protein FD | ||||
TrEMBL | K3XZQ1 | 1e-112 | K3XZQ1_SETIT; Uncharacterized protein | ||||
STRING | Si007412m | 1e-113 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4017 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 3e-10 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G282900.1.p |
Entrez Gene | 101767052 |