PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Seita.4G265300.5.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 302aa MW: 34896.4 Da PI: 7.1713

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G265300.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.1e-08	197	240	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +W++ + +l++++ +q+G++ ++ I + ++ +t+ q++ ++ + Seita.4G265300.5.p 197 RAKWSKSDTDLFYQGLQQFGSD-FAMIQQLLP-AKTRHQVRAKFKN 240 569*****************.*****.9*****99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.76E-10	188	245	IPR009057	Homeodomain-like
Pfam	PF15963	1.5E-24	190	272	No hit	No description
PROSITE profile	PS51293	10.277	195	246	IPR017884	SANT domain
SMART	SM00717	1.0E-6	196	244	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-5	197	240	IPR009057	Homeodomain-like
CDD	cd00167	6.89E-5	199	240	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MKLRCREKLQ KVGTPKHTGV DCFDEACVEH SLVEEDNDSG EDYIAGVKKK FTKKPRAGVE 60 EPQQQEVQKD KSQVSSGGWN TTLKDALVQK PEKKLTHRIH QKRMKEVKTL LETPREEIDP 120 MKLSAAHLRL LQEAREHVNA KELPSVPSSN TRFQLEDMDD LDCIHEEARN FDNDKTENHI 180 QNVTKLNYNS YMNIQTRAKW SKSDTDLFYQ GLQQFGSDFA MIQQLLPAKT RHQVRAKFKN 240 EEKKNPLQVH DAIIHRSGDY LYFKKVIEQL NIEDELPEIN STHREEGCTG WFHQRGGCTL 300 V*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G265300.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966291.1	0.0	transcription factor TFIIIB component B'' isoform X3
TrEMBL	A0A368QYI4	0.0	A0A368QYI4_SETIT; Uncharacterized protein
STRING	Pavir.Bb01981.1.p	1e-146	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-32	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Seita.4G265300.5.p