PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Seita.4G085600.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 274aa MW: 30734.4 Da PI: 6.3468

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G085600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.8e-09	125	159	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 WT+ E+ l++++ + +G g+Wk I++++ k+Rt+ Seita.4G085600.1.p 125 FWTKPEHRLFLRGLHVYGHGNWKNISKYFVKTRTP 159 6********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.84E-8	120	161	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-8	124	161	IPR009057	Homeodomain-like
Pfam	PF00249	8.3E-7	126	159	IPR001005	SANT/Myb domain
CDD	cd00167	2.51E-8	126	161	No hit	No description
PROSITE profile	PS50090	6.33	126	161	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MVKSLIARYN SDSSYTNDMN KKHNDIVNEV HATLPLKEKH QIIHLYVDLM MEMMQSGISD 60 GSYHSAMTSR DLSNNNFEIP VEDPTIDNMD MLLGYPTMEI MATRVAQEVP RRQPTSRMEK 120 KHIGFWTKPE HRLFLRGLHV YGHGNWKNIS KYFVKTRTPM QRYSINDVGL YDVEPWAQNN 180 TSGKEGSTFT SSANNPNRYG ANGQHATMNN LTQVYEATND NGQAAAGAGD QQMRATSSST 240 PPIMEGAGGP QVAWAGDQLG DFFPDQMMNM DML*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G085600.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966689.1	1e-124	uncharacterized protein LOC101759880
TrEMBL	A0A368QSI4	0.0	A0A368QSI4_SETIT; Uncharacterized protein
STRING	Si008720m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	3e-12	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Seita.4G085600.1.p