PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G000700.1.p
Common NameLOC101755267, SETIT_006105mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 620aa    MW: 67455.3 Da    PI: 5.1895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G000700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.87.9e-48321621128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp+GfrF+Ptdeelv++yLk+k++g+ ++    i++vd+  +ePw+Lp k  +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd
  Seita.4G000700.1.p  32 LPVGFRFRPTDEELVCHYLKPKIAGRVHPDLLLIPDVDLSACEPWELPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATGKD 122
                         79*************************999888***************5346667888********************************* PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + + s+  g+l+g+kktLvf++grap+g++t+W+mheyr 
  Seita.4G000700.1.p 123 RLIRSRpAGTLIGIKKTLVFHRGRAPRGHRTSWIMHEYRT 162
                         *****989999***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5331183IPR003441NAC domain
PROSITE profilePS5100554.54332183IPR003441NAC domain
PfamPF023652.0E-2633161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MAAAQAHAQA QRRGERKAMP SPPPPPPPPG ALPVGFRFRP TDEELVCHYL KPKIAGRVHP  60
DLLLIPDVDL SACEPWELPA KALIRSDDPE WFFFAPLDRK YPGGHRSNRS TAAGYWKATG  120
KDRLIRSRPA GTLIGIKKTL VFHRGRAPRG HRTSWIMHEY RTAEPQLQQG QNGSFVLYRL  180
FDKHEEEEPE AADAADSPST SSAADPPPIA PAVKAENLCQ PASAKMAHLL TTLSNNEPTA  240
AQEGDPLLDV LAQLPDLQPE QTYDGFPTIT SPMRPYTDHP FLGNVGGQDL SAYIDSIIAH  300
QDLEDLLVNP SLAKTVEHPT GNFEPIPTSL LVPSSSSSNN NRSPENSWAN LDTERLLLIQ  360
GADGTDAAAC CSSATKILQF DTGDANHDTG PQTDSASGVS AEASHLYNQY QLQSASIPQM  420
ELARSDMTDS DAFNGLEGSA PEPLMQQLSV SNFTDPHQGT ALRRIRLVHS IQRASVTEPV  480
LTSNSEGEDE ERSCYSTDNS STNNEDYANA GGAMHSQGGG VIPTQVVSST EVTGELQDFI  540
FDEGASSLHG VVRHGGNLKR RLKEEYMETN QDAGEILQQS IRVPREPSLR RRQRISSVVR  600
VLCLALVVIL VFVGLWKCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-433118816170NO APICAL MERISTEM PROTEIN
1ut4_B8e-433118816170NO APICAL MERISTEM PROTEIN
1ut7_A8e-433118816170NO APICAL MERISTEM PROTEIN
1ut7_B8e-433118816170NO APICAL MERISTEM PROTEIN
3swm_A7e-433118819173NAC domain-containing protein 19
3swm_B7e-433118819173NAC domain-containing protein 19
3swm_C7e-433118819173NAC domain-containing protein 19
3swm_D7e-433118819173NAC domain-containing protein 19
3swp_A7e-433118819173NAC domain-containing protein 19
3swp_B7e-433118819173NAC domain-containing protein 19
3swp_C7e-433118819173NAC domain-containing protein 19
3swp_D7e-433118819173NAC domain-containing protein 19
4dul_A8e-433118816170NAC domain-containing protein 19
4dul_B8e-433118816170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G000700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964251.10.0uncharacterized protein LOC101755267 isoform X2
TrEMBLA0A368QP710.0A0A368QP71_SETIT; Uncharacterized protein
STRINGSi006105m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.35e-63NAC transcription factor-like 9