PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G384400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | BES1 | ||||||||
Protein Properties | Length: 415aa MW: 41765.8 Da PI: 9.8981 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 137.9 | 9.9e-43 | 54 | 165 | 4 | 119 |
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 r+p++ ErEnn+rRERrRR ++++iy+ LRa+Gny lp +DnneVlkA creAGw+ve+DGttyr+gs+p+ g+ a +sp ss Seita.3G384400.1.p 54 ARTPSQVERENNRRRERRRRLVSSRIYTALRAEGNYTLPRNCDNNEVLKAVCREAGWIVEPDGTTYRRGSRPPrGVLGGFGATAPVSPASS 144 799**********************************************************************333344444444566666 PP DUF822 94 lqsslkssalaspvesysaspksssf 119 + + + p++sy ++ sss+ Seita.3G384400.1.p 145 TPP-----TPTPPTASYGLTLGSSSS 165 552.....233445555555555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.1E-40 | 54 | 167 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MNGGGGMVAA GAGGAGGSGG SGGGDRDKGK GIVFGNEYGS ARGRANGRAR NAPARTPSQV 60 ERENNRRRER RRRLVSSRIY TALRAEGNYT LPRNCDNNEV LKAVCREAGW IVEPDGTTYR 120 RGSRPPRGVL GGFGATAPVS PASSTPPTPT PPTASYGLTL GSSSSSSSYL TLGGGSGGIF 180 YGAAGSSSGL PAWFQRLSQA DGQASSSTTA SAPVTPQNAS PPQLTLARWA AEDNAAAAAA 240 AAAANLQPRW AAGAGTCRYA PQAQQQPLTM PPSPVGGGSG AVDPVLLLAG IQISAAAANN 300 NNYRRPPRPY TYSPLGTPGA SSFAAGASSS RLGTPGPVQS SGGPWAPAPA PAPAPAPAPA 360 PAPAARGGDD GDVEMEPREF SFAWDGEVSF GDYTDEDGLE LTLGNSKTRA DRRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 3e-19 | 75 | 132 | 392 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 3e-19 | 75 | 132 | 392 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 3e-19 | 75 | 132 | 392 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 3e-19 | 75 | 132 | 392 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G384400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101229 | 3e-34 | AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819084.1 | 2e-86 | protein BZR1 homolog 4-like | ||||
TrEMBL | A0A368QN84 | 0.0 | A0A368QN84_SETIT; Uncharacterized protein | ||||
STRING | Si024823m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18666 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.6 | 4e-22 | BES1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G384400.1.p |