PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G372100.1.p | ||||||||
Common Name | SETIT_024343mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 235aa MW: 27272.5 Da PI: 9.9404 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.4 | 1.6e-10 | 40 | 114 | 17 | 94 |
E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 17 vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 v+ k++a +h ++e++t+tl ++s+ ++W ++ +++g+++l+ G ++F ++ngL+egD+ +F++ ++ +++ +v Seita.3G372100.1.p 40 VIDKDYAVKHL--PHEDQTITLCHPSNiKKWHASFK-VNTDGTCILSLGSSDFFRDNGLQEGDISIFEVLKSqTRT--TV 114 89999999994..346679*****9999*******4.566667*************************77643444..43 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.35E-13 | 24 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-13 | 25 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-7 | 25 | 117 | No hit | No description |
SMART | SM01019 | 2.6E-4 | 27 | 120 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-8 | 40 | 116 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.797 | 40 | 120 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1 | 136 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-7 | 159 | 227 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.65E-9 | 170 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-8 | 183 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.755 | 200 | 234 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MRKYFTRCKE CIVHHYWKHM DDWGKSFLNV MIGDYVVRPV IDKDYAVKHL PHEDQTITLC 60 HPSNIKKWHA SFKVNTDGTC ILSLGSSDFF RDNGLQEGDI SIFEVLKSQT RTTVAVHLPK 120 RYRLPEGVTS SESSVYEDTK PQYAVSHKTR LDNQQKRKVV KKVKAIQSET PILVFVKGLS 180 GDYKMLITFQ HFARGKMLGG RWNQFVKDNM LRQGDICLFE LLKEKWLTMH GRFS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G372100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | K3ZCR5 | 1e-175 | K3ZCR5_SETIT; Uncharacterized protein | ||||
STRING | Si024343m | 1e-176 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G372100.1.p |